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Lag0034577 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034577
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr3:8581462..8582365
RNA-Seq ExpressionLag0034577
SyntenyLag0034577
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030932814.1 uncharacterized protein LOC115958537 [Quercus lobata]5.5e-1935.33Show/hide
Query:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGD
        A D ++  K   + ++E       S+ +P P K  A+ +            R   YTPL A  +QVL  I+D   LK  EK++ DP++RNKNKYC FH D
Subjt:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGD

Query:  HGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
        HGH T EC  L+ +IE LIR+G  + FVG +     L     +     L EI  I+GG+S       G+   S++ Y  A+ N+
Subjt:  HGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030936353.1 uncharacterized protein LOC115961515 [Quercus lobata]5.5e-1933.68Show/hide
Query:  DQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHG
        D ++  K   ++K+E    N   +  P P K + D +           AR   YTPL A  +QVL  I+D   LK  EK++ DP++RNKNKYC FH DHG
Subjt:  DQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHG

Query:  HATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSALG
        H T EC  L+ +I+ LIR+G  + FVG +     L     +     L EI+ I+GG+S       G+   S++ Y   + N+    ++    G
Subjt:  HATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSALG

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]1.4e-1937.04Show/hide
Query:  KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNK
        K   D+R            R  +YTPL A  EQVL  I+D   LK  EKL+ DP++RN+NKYC FH DHGH T EC  L+ +IE LIR+G  +GF+G ++
Subjt:  KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNK

Query:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL
                        L EI+ I+GGSS       G    S++ Y   + N+    ++  A+
Subjt:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL

XP_030970011.1 uncharacterized protein LOC115990308 [Quercus lobata]2.5e-1934.78Show/hide
Query:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGD
        A D ++  K+  + ++E       S+  P P K  A+ +            R   YTPL A  +QVL  I+D   LK  EK++ DP++RNK+KYC FH D
Subjt:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWP-KAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGD

Query:  HGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
        HGH T EC  L+ +IE LIR+G  + FVG +     L     +    LL EI+ I+GG+S       G+   S++ Y   + N+
Subjt:  HGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]2.5e-1932.64Show/hide
Query:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDH
        A D ++  K   S +++        + +   K   D+R            R  +YTPL A  EQVL  I+D   LK  EKL+ DP++RN+NKYC FH DH
Subjt:  ASDQLVDSKAGASRKLEGLLLNSISKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDH

Query:  GHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL
        GH T EC  L+ +IE LIR+G  +GF+G ++                L EI+ I+GGS        G    S++ Y   + N+    ++  A+
Subjt:  GHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL

TrEMBL top hitse value%identityAlignment
A0A2N9HFP5 Reverse transcriptase6.5e-1836.42Show/hide
Query:  SKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPK
        S    +PKAE      S+R    +E R   +TPL  S +QVL  IQD+  +K   KLRSDP +R+K+ YC FH DHGH T +C  L+ +IEALIR+G   
Subjt:  SKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPK

Query:  GFVGNNKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKA
         FV  +K +     RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ + + +    RK+
Subjt:  GFVGNNKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKA

A0A2N9I6U4 Reverse transcriptase2.9e-1837.3Show/hide
Query:  SKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPK
        S    +PKAE      S+R    +E R   +TPL  S +QVL  I+D   +K   KLRSDP +R+K+ YC FH DHGH T +C  L+ +IEALIR+G   
Subjt:  SKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPK

Query:  GFVGNNKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSALGDGRGR
         FV  +K++     RP   D+ K        +++ EI+TI+GG      A+ G  + SR+ Y     NI    ++  +  DGR R
Subjt:  GFVGNNKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSALGDGRGR

A0A2N9IUL6 Uncharacterized protein7.7e-1936.72Show/hide
Query:  LLNSISKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIR
        L+N  SK   +PK E     +S+R    +E R   +TPL  S +QVL  IQD   ++   KLRSDP++R+KN YC FH DHGH T +C  L+++IEALIR
Subjt:  LLNSISKSSPWPKAEADQRPMSHRAVRNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIR

Query:  KGYPKGFVGNNK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRK
        +G    FV  +K       RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ + + +    RK
Subjt:  KGYPKGFVGNNK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRK

A0A5C7IR28 Retrotrans_gag domain-containing protein5.0e-1831.38Show/hide
Query:  EAEQKLNRKKAHESSPLKTAPVTYTGNNDRKKSEARQSPRPSICYAIPRSPEPTEASDQLVDSKAGASRKLEGLLLNSISKSSPWPKAEADQRPMSHRAV
        E E++L  KK  E +   +      G   R++++  ++ RP I   IPR        DQ               L   + +  P      +  P + R  
Subjt:  EAEQKLNRKKAHESSPLKTAPVTYTGNNDRKKSEARQSPRPSICYAIPRSPEPTEASDQLVDSKAGASRKLEGLLLNSISKSSPWPKAEADQRPMSHRAV

Query:  RNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKR-----------
        R   +++  Y  L A+ EQ+LAA+ +T LL + E LR DP RRN+ KYC FHGD GH T EC  L+D IE LIR GY K F+   +  R           
Subjt:  RNQEARFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKR-----------

Query:  PLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSR
        P  +D+GK     +  + TI GG +  G +    +  SR
Subjt:  PLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSR

A0A6J1DZ52 uncharacterized protein LOC1110256127.7e-1945.95Show/hide
Query:  RFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFE
        +F++YTP T   EQVL  I+D  LLK  E +++ P++R+K +YC+FH DHGHAT +C  L++E+E LIRKGY K +V + K+  P   +  K       E
Subjt:  RFDRYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFE

Query:  IQTILGGSSEE
        I+TI+GGS+E+
Subjt:  IQTILGGSSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGGCCGAGCAGAAGCTCAATCGCAAAAAGGCCCACGAAAGTTCACCGCTAAAGACAGCGCCAGTTACGTACACAGGAAATAATGATAGGAAAAAGTCAGAGGC
TCGGCAAAGTCCGAGGCCGAGCATTTGTTACGCAATTCCTAGGAGCCCAGAACCGACAGAAGCCTCAGATCAACTCGTTGACAGTAAAGCAGGGGCTTCGAGAAAGCTTG
AAGGATTACTGCTCAACTCGATCAGCAAGAGCAGTCCTTGGCCAAAGGCCGAGGCCGACCAGAGGCCAATGAGCCACAGGGCTGTGCGGAACCAAGAAGCCAGATTCGAC
AGGTATACACCACTAACAGCTTCCTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATTTGTTGAAACGCCAAGAAAAGTTGAGATCAGACCCCGATAGGAGGAACAA
AAACAAATACTGCATGTTCCACGGAGACCACGGTCATGCAACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGTTACCCCAAGGGGTTCG
TTGGGAACAACAAAAGCAAGAGGCCACTGCCGGCAGATCAAGGTAAGGGCGGTGCCAACCTGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGA
GCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGGCCGAGC
CTTTGAGGGGTCAAGCTATCCTCTTCCAATGAAACGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGGCCGAGCAGAAGCTCAATCGCAAAAAGGCCCACGAAAGTTCACCGCTAAAGACAGCGCCAGTTACGTACACAGGAAATAATGATAGGAAAAAGTCAGAGGC
TCGGCAAAGTCCGAGGCCGAGCATTTGTTACGCAATTCCTAGGAGCCCAGAACCGACAGAAGCCTCAGATCAACTCGTTGACAGTAAAGCAGGGGCTTCGAGAAAGCTTG
AAGGATTACTGCTCAACTCGATCAGCAAGAGCAGTCCTTGGCCAAAGGCCGAGGCCGACCAGAGGCCAATGAGCCACAGGGCTGTGCGGAACCAAGAAGCCAGATTCGAC
AGGTATACACCACTAACAGCTTCCTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATTTGTTGAAACGCCAAGAAAAGTTGAGATCAGACCCCGATAGGAGGAACAA
AAACAAATACTGCATGTTCCACGGAGACCACGGTCATGCAACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGTTACCCCAAGGGGTTCG
TTGGGAACAACAAAAGCAAGAGGCCACTGCCGGCAGATCAAGGTAAGGGCGGTGCCAACCTGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGA
GCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGGCCGAGC
CTTTGAGGGGTCAAGCTATCCTCTTCCAATGAAACGTTGA
Protein sequenceShow/hide protein sequence
MAEAEQKLNRKKAHESSPLKTAPVTYTGNNDRKKSEARQSPRPSICYAIPRSPEPTEASDQLVDSKAGASRKLEGLLLNSISKSSPWPKAEADQRPMSHRAVRNQEARFD
RYTPLTASFEQVLAAIQDTNLLKRQEKLRSDPDRRNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNNKSKRPLPADQGKGGANLLFEIQTILGGSSEEGG
AAHGEQKMSRECYFMALGNIDRKAQATSALGDGRGRAFEGSSYPLPMKR