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Lag0034668 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034668
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:9647026..9649548
RNA-Seq ExpressionLag0034668
SyntenyLag0034668
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.3e-1533.83Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N++A+W  D    G GW++RD  G +I A  +  + E +++ LE  A+ EGL  +  R      + +ESD L+ +  L++ C+D +EI 
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.4e-1336.84Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N DA+W D L   G GW+VRDS+G  I A                KA+ + L+   G     +++E+ESDCL++V  +NK    L+E+ 
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         +V+ I     +L +  FKH     NGVAH IA
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1436.17Show/hide
Query:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD
        +T  N   W PP    W  N+DASW+D     G GW++R  DG ++ AG +  +   +V +LEA A+ EGL  L    G    L +E+D  ++   LN+ 
Subjt:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD

Query:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         EDL++   +V+ IL+L  +  +L+F    R  NG AHS+A
Subjt:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.6e-1533.09Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE
        W PP    WK N+DA+W  D    G GW++RD  G +I A  +  + E +++ LE  A+ EGL  +       ++ E      +ESD L+ +  L++ C+
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE

Query:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        D +EI  L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.8e-1339.69Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCL-DLVRCLNKDCEDLSEI
        W P +P  WK N DASWN  +   G GWV  D    +  AGL+       V++LEA A+  GL  L     D   + VESDCL +++  LN D  DLSE+
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCL-DLVRCLNKDCEDLSEI

Query:  KNLVDVILDLAPNLGVLSFKHCSRIQNGVAH
            +   D   NLGV+SF H  R +N +A+
Subjt:  KNLVDVILDLAPNLGVLSFKHCSRIQNGVAH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.6e-1533.83Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N++A+W  D    G GW++RD  G +I A  +  + E +++ LE  A+ EGL  +  R      + +ESD L+ +  L++ C+D +EI 
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1D4B6 uncharacterized protein LOC1110171811.1e-1336.84Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N DA+W D L   G GW+VRDS+G  I A                KA+ + L+   G     +++E+ESDCL++V  +NK    L+E+ 
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         +V+ I     +L +  FKH     NGVAH IA
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1DNV9 uncharacterized protein LOC1110224037.9e-1536.17Show/hide
Query:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD
        +T  N   W PP    W  N+DASW+D     G GW++R  DG ++ AG +  +   +V +LEA A+ EGL  L    G    L +E+D  ++   LN+ 
Subjt:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD

Query:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         EDL++   +V+ IL+L  +  +L+F    R  NG AHS+A
Subjt:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1DSV1 uncharacterized protein LOC1110236082.7e-1533.09Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE
        W PP    WK N+DA+W  D    G GW++RD  G +I A  +  + E +++ LE  A+ EGL  +       ++ E      +ESD L+ +  L++ C+
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE

Query:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        D +EI  L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A803L9N8 Uncharacterized protein2.8e-1232.48Show/hide
Query:  DDWILANVD------RRTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLEL
        D+++ AN+        R+ +   +W+PP   R+K N+DAS + D +  G G VVRD+ G ++    +S  G   +S +EA A+  G+  ++       +L
Subjt:  DDWILANVD------RRTHQNHEIWVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLEL

Query:  EVESDCLDLVRCLNKDCEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        EV SDCL ++  LN    + S  + +V  IL  A +   + F  C R+ N VAHS+A
Subjt:  EVESDCLDLVRCLNKDCEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.5e-0526.98Show/hide
Query:  CRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVI
        CR K N DAS ++   +SG GW++R+S G+++  G+   +G  +    E  A+   +      FG   ++  E D  ++ R +N    D   +K+ +D I
Subjt:  CRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVI

Query:  LDLAPNLGVLSFKHCSRIQNGVAHSI
            P+     F    R QN  A ++
Subjt:  LDLAPNLGVLSFKHCSRIQNGVAHSI

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.8e-0927.82Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP   + K N DAS ++   +SG GW++R+S G++I  G+   +G  +    E   +   +   YG FG + ++  E D   + R +N    +   ++
Subjt:  WVPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        + +D I    P+   + F    R QNG A  +A
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTATAGAAAGAAGAAATACTTTTTAAGGAGGGAGATTCAACACAACAACCTCAACTTTCTAGAGACCCACAACGGCCTCAATCTTCTAGATCTATACATAAACGA
CAAGTGGAGGCATCAACCTTCAATTTTTGTTTCAGTCAACTATTCTACCTTCTTCAGGAAGAATATTGAATTGACCATTCATGCTATCTGGGAGTGTAAGATGGCTAAGA
AGGTCTGGATTGATTGTATTCCTCAGATTCTTATGCTTTTTCAATTGCGCAGGGATGATTGGATACTCGCCAACGTAGATCGGAGAACCCACCAGAATCACGAGATTTGG
GTCCCTCCTCGCCCTTGCCGATGGAAATTTAATTCAGATGCATCCTGGAATGATGATTTGAAGATCAGCGGATTTGGTTGGGTGGTGCGTGATTCCGATGGATCTTTGAT
CTGTGCGGGCCTGCAATCTTCAAAAGGGGAGTGGTCAGTTAGTGTTCTCGAAGCCAAAGCGATGTGGGAAGGGTTGTCTTGCCTATATGGAAGATTTGGAGATAACCTGG
AATTAGAAGTTGAATCGGATTGCTTGGATCTCGTCCGCTGCTTGAACAAAGACTGTGAAGACTTGTCTGAAATCAAGAATTTGGTTGATGTCATTTTAGATCTGGCTCCC
AATTTAGGAGTGCTATCTTTCAAGCACTGCTCTAGAATTCAGAATGGGGTGGCTCACTCAATTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTATAGAAAGAAGAAATACTTTTTAAGGAGGGAGATTCAACACAACAACCTCAACTTTCTAGAGACCCACAACGGCCTCAATCTTCTAGATCTATACATAAACGA
CAAGTGGAGGCATCAACCTTCAATTTTTGTTTCAGTCAACTATTCTACCTTCTTCAGGAAGAATATTGAATTGACCATTCATGCTATCTGGGAGTGTAAGATGGCTAAGA
AGGTCTGGATTGATTGTATTCCTCAGATTCTTATGCTTTTTCAATTGCGCAGGGATGATTGGATACTCGCCAACGTAGATCGGAGAACCCACCAGAATCACGAGATTTGG
GTCCCTCCTCGCCCTTGCCGATGGAAATTTAATTCAGATGCATCCTGGAATGATGATTTGAAGATCAGCGGATTTGGTTGGGTGGTGCGTGATTCCGATGGATCTTTGAT
CTGTGCGGGCCTGCAATCTTCAAAAGGGGAGTGGTCAGTTAGTGTTCTCGAAGCCAAAGCGATGTGGGAAGGGTTGTCTTGCCTATATGGAAGATTTGGAGATAACCTGG
AATTAGAAGTTGAATCGGATTGCTTGGATCTCGTCCGCTGCTTGAACAAAGACTGTGAAGACTTGTCTGAAATCAAGAATTTGGTTGATGTCATTTTAGATCTGGCTCCC
AATTTAGGAGTGCTATCTTTCAAGCACTGCTCTAGAATTCAGAATGGGGTGGCTCACTCAATTGCCTGA
Protein sequenceShow/hide protein sequence
MNYRKKKYFLRREIQHNNLNFLETHNGLNLLDLYINDKWRHQPSIFVSVNYSTFFRKNIELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWILANVDRRTHQNHEIW
VPPRPCRWKFNSDASWNDDLKISGFGWVVRDSDGSLICAGLQSSKGEWSVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVILDLAP
NLGVLSFKHCSRIQNGVAHSIA