; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0034673 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034673
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr3:9684575..9688628
RNA-Seq ExpressionLag0034673
SyntenyLag0034673
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009536 - plastid (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFQ08629.1 hypothetical protein PHJA_003006900 [Phtheirospermum japonicum]1.5e-1961.22Show/hide
Query:  DPISLVMKRSLFRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQVGRFLAKLQTKRLGCSLH
        DPISLVMKR    S    R+VSSRQLNL              DGRTTGIEPARGGFTIHCLDPLGYI PYP TG  K  +   FLAKLQTK+ G ++H
Subjt:  DPISLVMKRSLFRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQVGRFLAKLQTKRLGCSLH

KAF3452243.1 hypothetical protein FNV43_RR08341 [Rhamnella rubrinervis]7.2e-2749.41Show/hide
Query:  GLLLQ----NQVA-----KTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSNCSLLVDCSAGAVTQ--
        GLLLQ     +VA     +TGYYAYST SDCDTIPLPAPIHVR YLYA T+R    +S   +    S   S         ++    LL      A  +  
Subjt:  GLLLQ----NQVA-----KTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSNCSLLVDCSAGAVTQ--

Query:  ------RGSPALQIQKWRGTYEYAKGRELRRRRIQANEVTKGTNELDNQLTITFLVIPAPVEIACFLDGN
                   L     + TYEYAKGREL RRRIQANEVT GTNEL++ LT+T   IPAPVEIA FLDGN
Subjt:  ------RGSPALQIQKWRGTYEYAKGRELRRRRIQANEVTKGTNELDNQLTITFLVIPAPVEIACFLDGN

KAF4349912.1 hypothetical protein G4B88_002334 [Cannabis sativa]5.7e-3243.09Show/hide
Query:  RHTTNSFEATITTEAGLLL----------QNQVAKTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSN
        +HTTNSFEAT TTEAGLL+          + +  +       T SDCDTIPLPAPIHVR YLYA  +  KDSY  SETR    + N     PLA LVNSN
Subjt:  RHTTNSFEATITTEAGLLL----------QNQVAKTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSN

Query:  CSLLVDCSAGAVTQRGSPALQIQ----------------------------------------------------KWRGTYEYAKGRELRRRRIQANEVT
         SLLVD SAGA TQRGSPAL                                                         + TYEYAKGREL RRRIQANEV 
Subjt:  CSLLVDCSAGAVTQRGSPALQIQ----------------------------------------------------KWRGTYEYAKGRELRRRRIQANEVT

Query:  KGTNELDNQLTITFLVIPAPVEIACFLDGNWFWNSISSWGFRFEDY
          TNEL++ LT+T   IPAPVEIA  +   +    ++ +  RF+ +
Subjt:  KGTNELDNQLTITFLVIPAPVEIACFLDGNWFWNSISSWGFRFEDY

KAG8362765.1 hypothetical protein BUALT_BualtUnG0040800 [Buddleja alternifolia]1.5e-1975.71Show/hide
Query:  FRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV
        FRSSTKK           GLSCVS  NGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYP TGE KLQ+V
Subjt:  FRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV

TMW84311.1 hypothetical protein EJD97_025440 [Solanum chilense]6.5e-2094.23Show/hide
Query:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV
        GLSCVS TNGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYPRTGE KLQQV
Subjt:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV

TrEMBL top hitse value%identityAlignment
A0A0D2PJ77 Uncharacterized protein7.3e-1795.56Show/hide
Query:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTG
        GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYP TG
Subjt:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTG

A0A494G8Z6 Uncharacterized protein2.6e-2267.42Show/hide
Query:  KGDRGDIPDPISLVMKRSLFRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV
        K  R    DPISLVMKR       +       +    GLSCVS TNGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYPRTGE KLQQV
Subjt:  KGDRGDIPDPISLVMKRSLFRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV

A0A5D2Q6B6 Uncharacterized protein7.3e-1795.56Show/hide
Query:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTG
        GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYP TG
Subjt:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTG

A0A6N2ATF0 Uncharacterized protein3.2e-2094.23Show/hide
Query:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV
        GLSCVS TNGPFIDGRTTGIEPARGGFTIHCLDPLGYI PYPRTGE KLQQV
Subjt:  GLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRTGEAKLQQV

A0A7J6DUY4 Complex1_30kDa domain-containing protein2.8e-3243.09Show/hide
Query:  RHTTNSFEATITTEAGLLL----------QNQVAKTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSN
        +HTTNSFEAT TTEAGLL+          + +  +       T SDCDTIPLPAPIHVR YLYA  +  KDSY  SETR    + N     PLA LVNSN
Subjt:  RHTTNSFEATITTEAGLLL----------QNQVAKTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDSYSRSETRSVCSYKNSYDCSPLAPLVNSN

Query:  CSLLVDCSAGAVTQRGSPALQIQ----------------------------------------------------KWRGTYEYAKGRELRRRRIQANEVT
         SLLVD SAGA TQRGSPAL                                                         + TYEYAKGREL RRRIQANEV 
Subjt:  CSLLVDCSAGAVTQRGSPALQIQ----------------------------------------------------KWRGTYEYAKGRELRRRRIQANEVT

Query:  KGTNELDNQLTITFLVIPAPVEIACFLDGNWFWNSISSWGFRFEDY
          TNEL++ LT+T   IPAPVEIA  +   +    ++ +  RF+ +
Subjt:  KGTNELDNQLTITFLVIPAPVEIACFLDGNWFWNSISSWGFRFEDY

SwissProt top hitse value%identityAlignment
A0ZZ27 DNA-directed RNA polymerase subunit beta8.0e-0592Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPG
        MLYLSPSRDEYYMVA GNSLALN G
Subjt:  MLYLSPSRDEYYMVATGNSLALNPG

Q09MI6 DNA-directed RNA polymerase subunit beta8.0e-0592Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPG
        MLYLSPSRDEYYMVA GNSLALN G
Subjt:  MLYLSPSRDEYYMVATGNSLALNPG

Q2L8Z9 DNA-directed RNA polymerase subunit beta8.0e-0592Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPG
        MLYLSPSRDEYYMVA GNSLALN G
Subjt:  MLYLSPSRDEYYMVATGNSLALNPG

Q4VZP1 DNA-directed RNA polymerase subunit beta2.5e-06100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPG
        MLYLSPSRDEYYMVATGNSLALNPG
Subjt:  MLYLSPSRDEYYMVATGNSLALNPG

Q8HVY5 DNA-directed RNA polymerase subunit beta8.0e-05100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALN
        MLYLSPSRDEYYMVATGNSLALN
Subjt:  MLYLSPSRDEYYMVATGNSLALN

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta8.3e-0580Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPG
        ML+LSPS+DEYYM+A GNSLALN G
Subjt:  MLYLSPSRDEYYMVATGNSLALNPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGCCCTTATCTTAGCCTTACCCGTTCGATTGATTGTTC
TAAAGTCGAAGTCGTTTCGTTAAGTCAAATTGAAAGACATACTACCAATTCCTTTGAAGCTACTATCACTACCGAAGCAGGCTTGCTCCTTCAAAATCAAGTGGCTAAGA
CGGGCTATTATGCGTATTCAACAGATTCCGATTGTGATACAATTCCATTGCCTGCTCCTATTCATGTTCGTGTTTACTTGTATGCCAGAACAACAAGGTCTAAGGACTCC
TATTCTAGGTCTGAAACTCGGTCTGTTTGCTCCTACAAAAACTCATACGACTGTTCCCCTTTAGCTCCTTTAGTAAATTCTAATTGTTCACTCTTAGTTGACTGTTCCGC
TGGGGCTGTAACTCAAAGAGGAAGCCCTGCGCTCCAGATCCAAAAGTGGAGGGGGACATACGAGTACGCGAAAGGAAGAGAGTTGAGACGGAGACGAATCCAAGCCAACG
AGGTTACAAAAGGTACGAACGAGTTGGATAACCAGTTGACGATTACTTTTCTAGTTATTCCCGCTCCAGTGGAGATTGCTTGCTTTCTCGATGGGAATTGGTTCTGGAAT
TCCATCTCTAGTTGGGGGTTTCGGTTCGAAGATTATAAAATGTATGTGGTGCGGGTTCATCTCTCTCGACCAGTTCAGGTGAAAGGGAAGGGTGATCGAGGGGACATACC
AGATCCGATCAGTCTCGTGATGAAGAGAAGTCTTTTCCGATCTTCCACTAAGAAAAGAAGGGTATCGTCACGACAACTCAATTTGCCCGGTTTGTCTTGTGTCTCCGTAA
CAAATGGTCCATTTATTGATGGGCGAACGACGGGGATTGAACCCGCGCGTGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCTGCCCCTACCCCCGCACA
GGGGAAGCAAAGCTTCAACAAGTCGGCCGCTTCCTGGCAAAGCTTCAAACAAAGAGGTTAGGCTGTTCACTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGCCCTTATCTTAGCCTTACCCGTTCGATTGATTGTTC
TAAAGTCGAAGTCGTTTCGTTAAGTCAAATTGAAAGACATACTACCAATTCCTTTGAAGCTACTATCACTACCGAAGCAGGCTTGCTCCTTCAAAATCAAGTGGCTAAGA
CGGGCTATTATGCGTATTCAACAGATTCCGATTGTGATACAATTCCATTGCCTGCTCCTATTCATGTTCGTGTTTACTTGTATGCCAGAACAACAAGGTCTAAGGACTCC
TATTCTAGGTCTGAAACTCGGTCTGTTTGCTCCTACAAAAACTCATACGACTGTTCCCCTTTAGCTCCTTTAGTAAATTCTAATTGTTCACTCTTAGTTGACTGTTCCGC
TGGGGCTGTAACTCAAAGAGGAAGCCCTGCGCTCCAGATCCAAAAGTGGAGGGGGACATACGAGTACGCGAAAGGAAGAGAGTTGAGACGGAGACGAATCCAAGCCAACG
AGGTTACAAAAGGTACGAACGAGTTGGATAACCAGTTGACGATTACTTTTCTAGTTATTCCCGCTCCAGTGGAGATTGCTTGCTTTCTCGATGGGAATTGGTTCTGGAAT
TCCATCTCTAGTTGGGGGTTTCGGTTCGAAGATTATAAAATGTATGTGGTGCGGGTTCATCTCTCTCGACCAGTTCAGGTGAAAGGGAAGGGTGATCGAGGGGACATACC
AGATCCGATCAGTCTCGTGATGAAGAGAAGTCTTTTCCGATCTTCCACTAAGAAAAGAAGGGTATCGTCACGACAACTCAATTTGCCCGGTTTGTCTTGTGTCTCCGTAA
CAAATGGTCCATTTATTGATGGGCGAACGACGGGGATTGAACCCGCGCGTGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCTGCCCCTACCCCCGCACA
GGGGAAGCAAAGCTTCAACAAGTCGGCCGCTTCCTGGCAAAGCTTCAAACAAAGAGGTTAGGCTGTTCACTTCATTGA
Protein sequenceShow/hide protein sequence
MLYLSPSRDEYYMVATGNSLALNPGPYLSLTRSIDCSKVEVVSLSQIERHTTNSFEATITTEAGLLLQNQVAKTGYYAYSTDSDCDTIPLPAPIHVRVYLYARTTRSKDS
YSRSETRSVCSYKNSYDCSPLAPLVNSNCSLLVDCSAGAVTQRGSPALQIQKWRGTYEYAKGRELRRRRIQANEVTKGTNELDNQLTITFLVIPAPVEIACFLDGNWFWN
SISSWGFRFEDYKMYVVRVHLSRPVQVKGKGDRGDIPDPISLVMKRSLFRSSTKKRRVSSRQLNLPGLSCVSVTNGPFIDGRTTGIEPARGGFTIHCLDPLGYICPYPRT
GEAKLQQVGRFLAKLQTKRLGCSLH