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Lag0034725 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034725
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotochlorophyllide-dependent translocon component 52, chloroplastic-like
Genome locationchr3:10197930..10198379
RNA-Seq ExpressionLag0034725
SyntenyLag0034725
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590272.1 Protochlorophyllide-dependent translocon component 52, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.5e-2264.58Show/hide
Query:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        RNP    R SSFNFK  T+RN  RKCE    A+ASD V TEQ E     +EKFDWF EWYPVM  CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
KAG7033444.1 Protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.5e-2264.58Show/hide
Query:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        RNP    R SSFNFK  T+RN  RKCE    A+ASD V TEQ E     +EKFDWF EWYPVM  CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
XP_022147697.1 protochlorophyllide-dependent translocon component 52, chloroplastic-like [Momordica charantia]1.2e-2364Show/hide
Query:  LSYRRNP---RRSSFNFKAATNRNASRK-----CEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        +++ RNP    RSSFNFKAA +RN SRK     C A+ASD VA+EQ E S    EKFDW+ EWYPVMP CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  LSYRRNP---RRSSFNFKAATNRNASRK-----CEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
XP_023533465.1 protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-2166.29Show/hide
Query:  RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        R SSFNFK  T+RN  RKCE    A+ASD V TEQ E     +EKFDWF EWYPVM  CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
XP_038880155.1 protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benincasa hispida]7.0e-2463.81Show/hide
Query:  TRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNE
        TR    ++  RNP    RSSFNFK  T+RN  RKCE    AMASD V TEQ E     EEKFDWF EWYPVMP CDLDKRV IAKK +GLDLV+W DRNE
Subjt:  TRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNE

Query:  NAWTI
        NAW +
Subjt:  NAWTI
TrEMBL top hitse value%identityAlignment
A0A5A7UQ27 Protochlorophyllide-dependent translocon component 527.0e-2255.75Show/hide
Query:  PASSNFIPTRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDL
        P + N   T     ++  RNP    RS  +FK AT+RNA RKCE    AMASD V +E+ E     EEKFDWF EWYPVMP CDLDKRV + KK +GLDL
Subjt:  PASSNFIPTRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDL

Query:  VMWRDRNENAWTI
        V+W DRNENAW +
Subjt:  VMWRDRNENAWTI
A0A5D3CD90 Protochlorophyllide-dependent translocon component 527.0e-2255.75Show/hide
Query:  PASSNFIPTRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDL
        P + N   T     ++  RNP    RS  +FK AT+RNA RKCE    AMASD V +E+ E     EEKFDWF EWYPVMP CDLDKRV + KK +GLDL
Subjt:  PASSNFIPTRTKPQLSYRRNP---RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDL

Query:  VMWRDRNENAWTI
        V+W DRNENAW +
Subjt:  VMWRDRNENAWTI
A0A6J1D331 protochlorophyllide-dependent translocon component 52, chloroplastic-like5.7e-2464Show/hide
Query:  LSYRRNP---RRSSFNFKAATNRNASRK-----CEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        +++ RNP    RSSFNFKAA +RN SRK     C A+ASD VA+EQ E S    EKFDW+ EWYPVMP CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  LSYRRNP---RRSSFNFKAATNRNASRK-----CEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
A0A6J1HB02 protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X17.0e-2263.54Show/hide
Query:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        RNP    R SSFNFK  T+RN  RKCE    A+ASD V T+Q E     +EKFDWF EWYPVM  CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
A0A6J1HD38 protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X27.0e-2263.54Show/hide
Query:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
        RNP    R SSFNFK  T+RN  RKCE    A+ASD V T+Q E     +EKFDWF EWYPVM  CDLDKRV IAKK +GLDLV+W DRNENAW +
Subjt:  RNP----RRSSFNFKAATNRNASRKCE----AMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWRDRNENAWTI
SwissProt top hitse value%identityAlignment
Q8W496 Protochlorophyllide-dependent translocon component 52, chloroplastic6.4e-1239.45Show/hide
Query:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR
        P  P S N + TR   + +   +   SS    AAT+ N+  + EA+                 +KFDW+  WYPVMP CDLDK+V   KK MG+DLV+W 
Subjt:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR

Query:  DRNENAWTI
        DRNE  W +
Subjt:  DRNENAWTI
Arabidopsis top hitse value%identityAlignment
AT3G44880.1 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain6.5e-0428.18Show/hide
Query:  NPWPRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLV
        +P  + P   +  P+R+K       NP R +      T+ +   K   +  ++   ++ E S     +F W + WYPV    DLD  V    + +G DLV
Subjt:  NPWPRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLV

Query:  MWRDRNENAW
        +W DRN+  W
Subjt:  MWRDRNENAW
AT4G25650.1 ACD1-like4.5e-1339.45Show/hide
Query:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR
        P  P S N + TR   + +   +   SS    AAT+ N+  + EA+                 +KFDW+  WYPVMP CDLDK+V   KK MG+DLV+W 
Subjt:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR

Query:  DRNENAWTI
        DRNE  W +
Subjt:  DRNENAWTI
AT4G25650.2 ACD1-like4.5e-1339.45Show/hide
Query:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR
        P  P S N + TR   + +   +   SS    AAT+ N+  + EA+                 +KFDW+  WYPVMP CDLDK+V   KK MG+DLV+W 
Subjt:  PRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRVSIAKKGMGLDLVMWR

Query:  DRNENAWTI
        DRNE  W +
Subjt:  DRNENAWTI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATTCTCCAAATCAATCTCAATTTCGATCTCCATCACATACCTGCAATTTCCTCTGGTGGCAATCCATGGCCGCGATCACCAGCATCCTCAAACTTCATTCCCAC
TCGAACCAAACCCCAACTCTCATACCGTCGCAATCCCCGCAGATCCTCTTTCAATTTCAAGGCGGCGACGAACCGAAATGCGTCCAGGAAGTGCGAAGCCATGGCATCCG
ATTTCGTCGCTACAGAACAAACGGAGGAATCGGCGGCGGTGGAGGAGAAGTTTGATTGGTTTGAGGAGTGGTATCCGGTGATGCCGGGGTGCGATTTGGACAAGAGAGTG
TCGATTGCGAAGAAAGGGATGGGGCTGGATTTGGTGATGTGGCGGGACAGGAATGAGAATGCGTGGACAATTCATGGCCACAAAAGTTGCTCAAATCTTCGCTCTTCTTC
TTCTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATTCTCCAAATCAATCTCAATTTCGATCTCCATCACATACCTGCAATTTCCTCTGGTGGCAATCCATGGCCGCGATCACCAGCATCCTCAAACTTCATTCCCAC
TCGAACCAAACCCCAACTCTCATACCGTCGCAATCCCCGCAGATCCTCTTTCAATTTCAAGGCGGCGACGAACCGAAATGCGTCCAGGAAGTGCGAAGCCATGGCATCCG
ATTTCGTCGCTACAGAACAAACGGAGGAATCGGCGGCGGTGGAGGAGAAGTTTGATTGGTTTGAGGAGTGGTATCCGGTGATGCCGGGGTGCGATTTGGACAAGAGAGTG
TCGATTGCGAAGAAAGGGATGGGGCTGGATTTGGTGATGTGGCGGGACAGGAATGAGAATGCGTGGACAATTCATGGCCACAAAAGTTGCTCAAATCTTCGCTCTTCTTC
TTCTTTCTAG
Protein sequenceShow/hide protein sequence
MFILQINLNFDLHHIPAISSGGNPWPRSPASSNFIPTRTKPQLSYRRNPRRSSFNFKAATNRNASRKCEAMASDFVATEQTEESAAVEEKFDWFEEWYPVMPGCDLDKRV
SIAKKGMGLDLVMWRDRNENAWTIHGHKSCSNLRSSSSF