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Lag0034835 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034835
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr3:11369849..11370169
RNA-Seq ExpressionLag0034835
SyntenyLag0034835
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044334.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-2465.96Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT++YKI+AKV AERLK TL  T+  NQ AFV  RQI DAIL+ANEA+++WRV K KG +IKLD+EKAFDK++W FID VL+ KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
KAA0055625.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-2568.09Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT+LYK++AKV AERLK TL  T++ NQ AFV  RQI+DAIL+ANEA+D+WRV K KG +IKLD+EKAFDKI+W FID +LL KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
TYK10921.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-2568.09Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT+LYK++AKV AERLK TL  T++ NQ AFV  RQI+DAIL+ANEA+D+WRV K KG +IKLD+EKAFDKI+W FID +LL KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
TYK21642.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-2464.84Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKG
        +RPISLTT++YK++AKV AERLK TL  T++ NQ AFV  RQI DAIL+ANEA+D+WRV K +G +IKLD+EKAFDK++W FID +L+ KG
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKG
TYK29463.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-2567.02Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT++YKI+AKV AERLK TL  T++ NQ AFV  RQI DAIL+ANEA+D+WRV K KG +IKLD+EKAFDK++W FID VL+ KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
TrEMBL top hitse value%identityAlignment
A0A5A7TAQ1 LINE-1 retrotransposable element ORF2 protein8.2e-2564.84Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKG
        +RPISLTT++YK++AKV AERLK TL  T++ NQ AFV  RQI DAIL+ANEA+D+WRV K +G +IKLD+EKAFDK++W FID +L+ KG
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKG
A0A5A7TMG5 LINE-1 retrotransposable element ORF2 protein8.2e-2565.96Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT++YKI+AKV AERLK TL  T+  NQ AFV  RQI DAIL+ANEA+++WRV K KG +IKLD+EKAFDK++W FID VL+ KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
A0A5A7UPV6 LINE-1 retrotransposable element ORF2 protein5.7e-2668.09Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT+LYK++AKV AERLK TL  T++ NQ AFV  RQI+DAIL+ANEA+D+WRV K KG +IKLD+EKAFDKI+W FID +LL KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
A0A5D3CGJ3 LINE-1 retrotransposable element ORF2 protein5.7e-2668.09Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT+LYK++AKV AERLK TL  T++ NQ AFV  RQI+DAIL+ANEA+D+WRV K KG +IKLD+EKAFDKI+W FID +LL KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
A0A5D3E088 LINE-1 retrotransposable element ORF2 protein1.3e-2567.02Show/hide
Query:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
        +RPISLTT++YKI+AKV AERLK TL  T++ NQ AFV  RQI DAIL+ANEA+D+WRV K KG +IKLD+EKAFDK++W FID VL+ KG  I
Subjt:  FRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDI
SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein2.2e-0637.21Show/hide
Query:  ISYFRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFI
        I  +RP+SL +T YKI+AK  + RLK  L + I  +QS  V  R I D + L  + + F R +      + LD EKAFD++   ++
Subjt:  ISYFRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFI
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.0e-0639.47Show/hide
Query:  ERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGV----LIKLDVEKAFDKISWYFIDCVLLNKG
        ERLK  + + I   Q++F+  R  +D I+   EAV   R  +KKGV    L+KLD+EKA+D+I W +++  L++ G
Subjt:  ERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGV----LIKLDVEKAFDKISWYFIDCVLLNKG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTAAAATCTCATATTTTCGTCCAATTAGCCTTACCACAACTCTTTATAAAATTCTTGCTAAGGTTTCGGCGGAACGTTTAAAGTTCACTTTGGAAGACACTAT
AAGCTTGAATCAATCTGCTTTTGTTCATAAAAGACAAATCTCCGACGCAATCTTGTTAGCCAATGAAGCCGTTGACTTCTGGAGAGTTTCTAAAAAGAAAGGTGTTCTTA
TAAAGCTCGATGTGGAGAAGGCGTTCGACAAAATAAGCTGGTACTTCATTGATTGTGTTTTACTCAATAAAGGATCAGATATCCTACAACTTGGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTAAAATCTCATATTTTCGTCCAATTAGCCTTACCACAACTCTTTATAAAATTCTTGCTAAGGTTTCGGCGGAACGTTTAAAGTTCACTTTGGAAGACACTAT
AAGCTTGAATCAATCTGCTTTTGTTCATAAAAGACAAATCTCCGACGCAATCTTGTTAGCCAATGAAGCCGTTGACTTCTGGAGAGTTTCTAAAAAGAAAGGTGTTCTTA
TAAAGCTCGATGTGGAGAAGGCGTTCGACAAAATAAGCTGGTACTTCATTGATTGTGTTTTACTCAATAAAGGATCAGATATCCTACAACTTGGAGTGTAA
Protein sequenceShow/hide protein sequence
MAGKISYFRPISLTTTLYKILAKVSAERLKFTLEDTISLNQSAFVHKRQISDAILLANEAVDFWRVSKKKGVLIKLDVEKAFDKISWYFIDCVLLNKGSDILQLGV