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Lag0034861 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034861
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative isoform 2
Genome locationchr3:11754680..11756627
RNA-Seq ExpressionLag0034861
SyntenyLag0034861
Gene Ontology termsGO:0030687 - preribosome, large subunit precursor (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052839.1 Transducin/WD40 repeat-like superfamily protein, putative isoform 2 [Cucumis melo var. makuwa]1.1e-4177.12Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGMSSNQKMSSELASK
        K   + +  K   +L  K
Subjt:  KKPGMSSNQKMSSELASK

KAG6588180.1 Transcription factor basic helix-loop-helix 122, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4086.6Show/hide
Query:  NDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGA-GENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTKKPGM
        NDSN+PTDQLFLRKPSWLPTDSIY+VGS SDEGIHLLDFHPD RSPSHV++NDEL+GA GENK+RQNRFVKLSEGVTSCAAHPLNGTIIAGTK   +
Subjt:  NDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGA-GENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTKKPGM

TYK18832.1 Transducin/WD40 repeat-like superfamily protein, putative isoform 2 [Cucumis melo var. makuwa]3.9e-4272.73Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  -----------------KKPGMSSNQKMSSEL
                         K+  +S NQKM SEL
Subjt:  -----------------KKPGMSSNQKMSSEL

XP_016900864.1 PREDICTED: uncharacterized protein LOC103492074 isoform X1 [Cucumis melo]1.5e-4183.81Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGM
        K   +
Subjt:  KKPGM

XP_016900865.1 PREDICTED: uncharacterized protein LOC103492074 isoform X2 [Cucumis melo]1.5e-4183.81Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGM
        K   +
Subjt:  KKPGM

TrEMBL top hitse value%identityAlignment
A0A1S4DXZ9 uncharacterized protein LOC103492074 isoform X17.2e-4283.81Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGM
        K   +
Subjt:  KKPGM

A0A1S4DYR9 uncharacterized protein LOC103492074 isoform X27.2e-4283.81Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGM
        K   +
Subjt:  KKPGM

A0A5A7UH29 Transducin/WD40 repeat-like superfamily protein, putative isoform 25.5e-4277.12Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  KKPGMSSNQKMSSELASK
        K   + +  K   +L  K
Subjt:  KKPGMSSNQKMSSELASK

A0A5D3D5N4 Transducin/WD40 repeat-like superfamily protein, putative isoform 21.9e-4272.73Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT
        P P+ +  NDSN+PTDQLFLRKPSWLPTDSIY VGSSSDEGIHLLDFHPDSRSPSHVDYNDEL G+G E+KKRQNRFVKLSEGVTSCAAHPLNGTI AGT
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAG-ENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGT

Query:  -----------------KKPGMSSNQKMSSEL
                         K+  +S NQKM SEL
Subjt:  -----------------KKPGMSSNQKMSSEL

A0A6J1DKZ0 uncharacterized protein LOC111021413 isoform X57.9e-4183.96Show/hide
Query:  NDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGA-GENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTKKPG--MS
        NDSN+ +DQLFLRKPSWLPTDSI+AVGSSSDEGIHLLDFHPDSRSPSHVDYND+L  A GENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTK     M 
Subjt:  NDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGA-GENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTKKPG--MS

Query:  SNQKMS
        S +K S
Subjt:  SNQKMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G12920.1 Transducin/WD40 repeat-like superfamily protein3.2e-2654.13Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI
        P P+ +  ++S+     L LRKPSWLPT SIY VGS S++GIH+LDFHP SRSP HVDY+++      N+KR     +N+FV LSE VT CAAHPLNG I
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI

Query:  IAGTKKPGM
        +AGT+   +
Subjt:  IAGTKKPGM

AT5G12920.2 Transducin/WD40 repeat-like superfamily protein3.2e-2654.13Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI
        P P+ +  ++S+     L LRKPSWLPT SIY VGS S++GIH+LDFHP SRSP HVDY+++      N+KR     +N+FV LSE VT CAAHPLNG I
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI

Query:  IAGTKKPGM
        +AGT+   +
Subjt:  IAGTKKPGM

AT5G12920.3 Transducin/WD40 repeat-like superfamily protein3.2e-2654.13Show/hide
Query:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI
        P P+ +  ++S+     L LRKPSWLPT SIY VGS S++GIH+LDFHP SRSP HVDY+++      N+KR     +N+FV LSE VT CAAHPLNG I
Subjt:  PTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKR-----QNRFVKLSEGVTSCAAHPLNGTI

Query:  IAGTKKPGM
        +AGT+   +
Subjt:  IAGTKKPGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTCACACATATTCATTGCCCACCCCCAGCTTGGTTAGTAGAAATGATTCCAACGTGCCCACAGATCAATTATTTTTGAGGAAACCATCATGGCTGCCTACAGA
TTCTATCTATGCGGTTGGATCTTCATCTGATGAAGGCATTCATCTTTTGGATTTTCATCCAGACTCCCGCTCTCCCAGTCACGTGGACTACAATGATGAGTTATTTGGTG
CTGGAGAAAACAAGAAACGACAGAACAGGTTTGTTAAATTGTCTGAAGGAGTCACTTCTTGTGCAGCTCACCCCCTCAATGGCACCATCATAGCTGGAACAAAGAAGCCG
GGGATGTCGAGTAATCAGAAAATGTCGTCGGAGCTTGCTTCCAAAATTCCTGTATATAGATCTATTGACACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTCACACATATTCATTGCCCACCCCCAGCTTGGTTAGTAGAAATGATTCCAACGTGCCCACAGATCAATTATTTTTGAGGAAACCATCATGGCTGCCTACAGA
TTCTATCTATGCGGTTGGATCTTCATCTGATGAAGGCATTCATCTTTTGGATTTTCATCCAGACTCCCGCTCTCCCAGTCACGTGGACTACAATGATGAGTTATTTGGTG
CTGGAGAAAACAAGAAACGACAGAACAGGTTTGTTAAATTGTCTGAAGGAGTCACTTCTTGTGCAGCTCACCCCCTCAATGGCACCATCATAGCTGGAACAAAGAAGCCG
GGGATGTCGAGTAATCAGAAAATGTCGTCGGAGCTTGCTTCCAAAATTCCTGTATATAGATCTATTGACACCTGA
Protein sequenceShow/hide protein sequence
MSGHTYSLPTPSLVSRNDSNVPTDQLFLRKPSWLPTDSIYAVGSSSDEGIHLLDFHPDSRSPSHVDYNDELFGAGENKKRQNRFVKLSEGVTSCAAHPLNGTIIAGTKKP
GMSSNQKMSSELASKIPVYRSIDT