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Lag0034884 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034884
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:11975488..11976023
RNA-Seq ExpressionLag0034884
SyntenyLag0034884
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]3.8e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
CAB4274761.1 unnamed protein product [Prunus armeniaca]3.8e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
CAB4291403.1 unnamed protein product [Prunus armeniaca]3.8e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
CAB4321714.1 unnamed protein product [Prunus armeniaca]3.8e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
XP_028960018.1 uncharacterized protein LOC114825459 [Malus domestica]1.3e-0632.71Show/hide
Query:  GRAWNTQRLRS--------CLDEEDMRLVLSIMICPNKLPGGECELEEAWVREDGLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFET
        GR  N+++ +         CLD    +L   I  C N        L+   +R D +C VCG  +ET NH+   CE +  FWF SPLQ+++ +   +DF  
Subjt:  GRAWNTQRLRS--------CLDEEDMRLVLSIMICPNKLPGGECELEEAWVREDGLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFET

Query:  SWGGLRN
        SW    N
Subjt:  SWGGLRN
TrEMBL top hitse value%identityAlignment
A0A6J5UE59 Reverse transcriptase domain-containing protein1.9e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
A0A6J5UF50 Uncharacterized protein1.9e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
A0A6J5VSP2 Uncharacterized protein1.9e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
A0A6J5WPU6 Reverse transcriptase domain-containing protein1.9e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
A0A6J5YDN0 Uncharacterized protein1.9e-0650Show/hide
Query:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
        G C  CG ++ET  H+  EC+ ARAFWF SPLQ+D  K    DF ++W
Subjt:  GLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAAATGGGAGAGCGTGGAACACTCAAAGACTTCGATCTTGCCTGGATGAGGAAGATATGAGACTGGTTTTGTCCATTATGATCTGTCCAAATAAACTACCTGG
TGGTGAATGTGAACTTGAGGAGGCGTGGGTGAGGGAGGATGGTCTGTGTGTGGTTTGTGGTCATGAGGAGGAAACTACGAATCACGTCCTTTTGGAGTGTGAGCTGGCCA
GGGCCTTTTGGTTTGGTTCTCCACTTCAAATGGATACGAGGAAGTTCTACCATCTGGATTTTGAGACAAGCTGGGGAGGATTACGCAATGGCTCGGGACTCACGACCAGG
CTGAGGAATTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAAATGGGAGAGCGTGGAACACTCAAAGACTTCGATCTTGCCTGGATGAGGAAGATATGAGACTGGTTTTGTCCATTATGATCTGTCCAAATAAACTACCTGG
TGGTGAATGTGAACTTGAGGAGGCGTGGGTGAGGGAGGATGGTCTGTGTGTGGTTTGTGGTCATGAGGAGGAAACTACGAATCACGTCCTTTTGGAGTGTGAGCTGGCCA
GGGCCTTTTGGTTTGGTTCTCCACTTCAAATGGATACGAGGAAGTTCTACCATCTGGATTTTGAGACAAGCTGGGGAGGATTACGCAATGGCTCGGGACTCACGACCAGG
CTGAGGAATTGCTAA
Protein sequenceShow/hide protein sequence
MEENGRAWNTQRLRSCLDEEDMRLVLSIMICPNKLPGGECELEEAWVREDGLCVVCGHEEETTNHVLLECELARAFWFGSPLQMDTRKFYHLDFETSWGGLRNGSGLTTR
LRNC