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Lag0034925 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034925
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr3:12454347..12454694
RNA-Seq ExpressionLag0034925
SyntenyLag0034925
Gene Ontology termsGO:0006221 - pyrimidine nucleotide biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0004519 - endonuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016743 - carboxyl- or carbamoyltransferase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9465329.1 hypothetical protein C3L33_02763, partial [Rhododendron williamsianum]2.1e-0747.37Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
        MGG KFYVVFVGR PG+Y  W  C+ QV+ F GAV++ Y ++D+    ++ +T +V+
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
KAF7142433.1 hypothetical protein RHSIM_Rhsim05G0091300 [Rhododendron simsii]1.2e-0749.12Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
        M G KFYVVFVGR PG+Y +W  C+ QV+GF GAV+  + ++D+    ++AYT +V+
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
MBQ1972841.1 ribonuclease H family protein [Paraprevotella sp.]2.3e-0653.06Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
        MGG KFYVV+ G  PG+Y +W EC +Q++GF GAVY+S+ T ++ E  Y
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
MBX2872433.1 ribonuclease H family protein [Saprospiraceae bacterium]3.9e-0637.5Show/hide
Query:  NKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVS---TCSGTYHVL
        NKFYVV+ G  PGVY +W EC RQ+ GF GA Y+ + T ++ E  Y+    +    SS+ G      S P    D N+V  ++S    C+G   V+
Subjt:  NKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVS---TCSGTYHVL
WP_068606887.1 ribonuclease H family protein [Paenibacillus swuensis]3.0e-0649.02Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIA
        M  +KFYVV+ GR PG+Y +W EC +Q+HG+ GA Y+SYE+  + +  Y A
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIA
TrEMBL top hitse value%identityAlignment
A0A172TIY4 Ribonuclease H1.4e-0649.02Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIA
        M  +KFYVV+ GR PG+Y +W EC +Q+HG+ GA Y+SYE+  + +  Y A
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIA
A0A6A4MEB8 RING-type domain-containing protein (Fragment)9.9e-0847.37Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
        MGG KFYVVFVGR PG+Y  W  C+ QV+ F GAV++ Y ++D+    ++ +T +V+
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVD
A0A6B0H572 Ribonuclease H5.5e-0653.06Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
        MG +KFYVV+ G+ PG+Y TW EC  QV G+ GA Y+S+E+    EA Y
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
A0A7C3DQ91 Ribonuclease H3.2e-0650Show/hide
Query:  NKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
        +KFYVV+ G  PG+Y +W EC++Q+HGF GA Y+SY+T+ + +  Y
Subjt:  NKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
A0A7J0FJU9 Cauli_VI domain-containing protein4.2e-0635.85Show/hide
Query:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGFFLG
        +YVVFVGR PG+Y TW  C++QV+GF  AVY+ Y ++D+      A+ M++ + +   G+          E  RN   + +ST SG  H  ++++ F LG
Subjt:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGFFLG

Query:  VAVVIL
          V +L
Subjt:  VAVVIL
SwissProt top hitse value%identityAlignment
Q04740 Ribonuclease H6.4e-0440.48Show/hide
Query:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEA
        FY V  GR  G+Y TW EC  QV G+ GA+Y+ + +++  ++
Subjt:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEA
Q07762 Ribonuclease H2.8e-0745Show/hide
Query:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGD
        FYVV VGR  G+Y TW +C+ QV GF GAVY+S+ T  +  A   A+        S  GD
Subjt:  FYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGD
Q9KEI9 Ribonuclease H4.0e-0642.86Show/hide
Query:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
        M  +K+YVV+ GR PG+Y +W  C  QV G+ GA ++SY + ++ EA +
Subjt:  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATY
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGGAACAAATTCTACGTCGTTTTCGTCGGGCGCATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTTGTGGTGCCGTTTACCA
GTCGTATGAGACGTTTGACGACACAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTA
ACCGTGAACTAGATAGAAATGTAGTCAATAGGACCGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATA
TTAGGTAGTCTGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGGAACAAATTCTACGTCGTTTTCGTCGGGCGCATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTTGTGGTGCCGTTTACCA
GTCGTATGAGACGTTTGACGACACAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTA
ACCGTGAACTAGATAGAAATGTAGTCAATAGGACCGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATA
TTAGGTAGTCTGATGTAG
Protein sequenceShow/hide protein sequence
MGGNKFYVVFVGRMPGVYMTWYECARQVHGFCGAVYQSYETFDDTEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGFFLGVAVVI
LGSLM