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Lag0034930 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034930
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpseudouridine-5'-phosphate glycosidase
Genome locationchr3:12532432..12533904
RNA-Seq ExpressionLag0034930
SyntenyLag0034930
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0004730 - pseudouridylate synthase activity (molecular function)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007342 - Pseudouridine-5'-phosphate glycosidase
IPR022830 - Indigoidine synthase A-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023836.1 psuG [Cucurbita argyrosperma subsp. argyrosperma]2.7e-4174.13Show/hide
Query:  MASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVA
        MASSSSSSSSALSRISNLSRHFH SDSK+ DNPQGAIDAP  GLIKIS EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVA
Subjt:  MASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVA

Query:  ILDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        ILDGTPC  LN        IL   +    R +IA +   + NG
Subjt:  ILDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

XP_008450374.1 PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X1 [Cucumis melo]5.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

XP_008450375.1 PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X2 [Cucumis melo]5.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

XP_008450376.1 PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X3 [Cucumis melo]5.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

XP_038878447.1 pseudouridine-5'-phosphate glycosidase [Benincasa hispida]1.2e-4173.94Show/hide
Query:  ASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAI
        +SSSSSSSSALSRISNLSRHFHS DSKT DNPQGAIDA G GLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEA+VRKNGAVPATVAI
Subjt:  ASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAI

Query:  LDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        +DGTPC  LN        IL N++    R +IA +   R NG
Subjt:  LDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

TrEMBL top hitse value%identityAlignment
A0A1S3BNH4 pseudouridine-5'-phosphate glycosidase isoform X22.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

A0A1S3BP55 pseudouridine-5'-phosphate glycosidase isoform X32.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

A0A1S3BQ44 pseudouridine-5'-phosphate glycosidase isoform X12.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

A0A5D3DW67 Pseudouridine-5'-phosphate glycosidase isoform X12.9e-4174.45Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        SSSSALSRISNLSRHFHS +SKT D+PQGAIDAPGGGLIKIS+EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGAVPATVAILDGTP
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        C  LN        IL N +    R +IA +     NG
Subjt:  C-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

A0A6J1H9J4 uncharacterized protein LOC1114613676.4e-4173.43Show/hide
Query:  MASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVA
        MASSSSSSSSALSRISNLSRHFH SDSK+ DNPQGAIDAP  GLIKIS EVS A+SRG PVVALESTIISHGMPYPQNLET KEVEAIVRKNGA PATVA
Subjt:  MASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVA

Query:  ILDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG
        ILDGTPC  LN        IL   +    R +IA +   + NG
Subjt:  ILDGTPC-SLN-------LILENEIVLLHRSNIAPMFCHRSNG

SwissProt top hitse value%identityAlignment
A9GT78 Pseudouridine-5'-phosphate glycosidase9.6e-1873.33Show/hide
Query:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG
        + IS+EV  AL+ G PVVALESTII+HGMPYPQNLE V+ VEA+VR+NGAVPAT+AI+DG
Subjt:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG

B1HV79 Pseudouridine-5'-phosphate glycosidase9.0e-1665Show/hide
Query:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG
        I +S EV    ++G P+VALESTIISHGMPYPQN++T +EVE I+R NGAVPAT+A++DG
Subjt:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG

Q2SM69 Pseudouridine-5'-phosphate glycosidase9.0e-1670Show/hide
Query:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG
        + IS EV  AL+ G+PVVALESTIISHGMP+PQN ET  +VE IVR NGAVPAT+AI+ G
Subjt:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG

Q67N11 Pseudouridine-5'-phosphate glycosidase2.0e-1557.5Show/hide
Query:  LIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTPCSLNLILENEIVLLHRS
        L+  + EV  AL R  PVVALESTIISHGMPYP+NL T +EVE IVR  GAVPAT+A++ G  C + L  + E+ LL  S
Subjt:  LIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTPCSLNLILENEIVLLHRS

Q9RS16 Pseudouridine-5'-phosphate glycosidase1.5e-1568.33Show/hide
Query:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG
        + +  EV+ ALS+G PVVALESTIISHGMPYPQN+E  + VE IVR NGAVPAT+A+L G
Subjt:  IKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDG

Arabidopsis top hitse value%identityAlignment
AT1G50510.1 indigoidine synthase A family protein2.3e-2258.42Show/hide
Query:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP
        +SS A SRISNL  H    ++  +             L+KIS +VS ALS G  VVALESTIISHGMPYPQNL+T KEVE+IVR+NGA+PAT+AIL+G P
Subjt:  SSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTP

Query:  C
        C
Subjt:  C


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCTCCAGGATATCTAATCTCAGTAGACACTTTCACTCATCAGACTCGAAAACCAGAGATAACCCACAGGGTGCCAT
TGACGCTCCAGGTGGAGGCCTAATTAAGATATCTGCCGAAGTTTCTCTTGCCTTGTCTCGTGGGGATCCTGTTGTGGCCCTTGAATCGACCATCATCTCACATGGGATGC
CATATCCACAAAATCTGGAAACTGTGAAGGAAGTAGAAGCGATAGTGAGAAAGAATGGAGCGGTTCCTGCTACTGTAGCAATTTTAGATGGCACACCATGTTCTCTCAAC
CTCATCCTTGAAAATGAAATTGTGTTGCTCCACAGATCGAATATTGCTCCTATGTTCTGCCATCGATCAAATGGGCCTTCAAAGAATGTGATATCTGGCTCTGTGGGCCC
TACCTACTGTATGGTCCCTTCATCCTCTACTAGATTAGTAATTGCAACAGTTTGTTCTTGCAGCCTTACCATGGAGCAAATTTTAATCATAGTTGAAGGAACTGAAATCA
GATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCTCCAGGATATCTAATCTCAGTAGACACTTTCACTCATCAGACTCGAAAACCAGAGATAACCCACAGGGTGCCAT
TGACGCTCCAGGTGGAGGCCTAATTAAGATATCTGCCGAAGTTTCTCTTGCCTTGTCTCGTGGGGATCCTGTTGTGGCCCTTGAATCGACCATCATCTCACATGGGATGC
CATATCCACAAAATCTGGAAACTGTGAAGGAAGTAGAAGCGATAGTGAGAAAGAATGGAGCGGTTCCTGCTACTGTAGCAATTTTAGATGGCACACCATGTTCTCTCAAC
CTCATCCTTGAAAATGAAATTGTGTTGCTCCACAGATCGAATATTGCTCCTATGTTCTGCCATCGATCAAATGGGCCTTCAAAGAATGTGATATCTGGCTCTGTGGGCCC
TACCTACTGTATGGTCCCTTCATCCTCTACTAGATTAGTAATTGCAACAGTTTGTTCTTGCAGCCTTACCATGGAGCAAATTTTAATCATAGTTGAAGGAACTGAAATCA
GATAA
Protein sequenceShow/hide protein sequence
MASSSSSSSSALSRISNLSRHFHSSDSKTRDNPQGAIDAPGGGLIKISAEVSLALSRGDPVVALESTIISHGMPYPQNLETVKEVEAIVRKNGAVPATVAILDGTPCSLN
LILENEIVLLHRSNIAPMFCHRSNGPSKNVISGSVGPTYCMVPSSSTRLVIATVCSCSLTMEQILIIVEGTEIR