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Lag0034984 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034984
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:13292500..13294320
RNA-Seq ExpressionLag0034984
SyntenyLag0034984
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO73078.1 reverse transcriptase [Corchorus capsularis]8.4e-0437.84Show/hide
Query:  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRS
        K G    R D P   +W   KYE+LP++C  CGRIGHV K+  +   D       + YG WM  T+     F S
Subjt:  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRS

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.3e-0440.3Show/hide
Query:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT--RRSSNV
        + LD P+G  W PI+YE+LP+   +CGR+ H+ K+ +   VD  S S+  +YG W+ F   + SSN+
Subjt:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT--RRSSNV

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.9e-0437.29Show/hide
Query:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF
        + +D P+G  W PI+YE+LP+ C +CG IGH + +    ++     S+   EYG W+ F
Subjt:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF

TrEMBL top hitse value%identityAlignment
A0A1R3HRY4 Reverse transcriptase4.1e-0437.84Show/hide
Query:  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRS
        K G    R D P   +W   KYE+LP++C  CGRIGHV K+  +   D       + YG WM  T+     F S
Subjt:  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRS

A0A6J1BSZ1 uncharacterized protein LOC1110054816.3e-0540.3Show/hide
Query:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT--RRSSNV
        + LD P+G  W PI+YE+LP+   +CGR+ H+ K+ +   VD  S S+  +YG W+ F   + SSN+
Subjt:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT--RRSSNV

A0A6J1DU55 uncharacterized protein LOC1110231351.4e-0437.29Show/hide
Query:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF
        + +D P+G  W PI+YE+LP+ C +CG IGH + +    ++     S+   EYG W+ F
Subjt:  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGTCCGTTGAAGAATTCGGAGTCGTCAACGGAGGCGATGTGATGCAGCGCCTTCAAGGCGGCTTGGAACATTCCAAACAGTTTATTAGTGGAAAGGATGGGAC
TAAATCTGTACGTCTTGATGATCCTTTGGGTAGTGTTTGGACTCCTATCAAATATGAGAAGCTACCAGAAATTTGTTCTTATTGCGGCCGAATAGGACACGTTACAAAGA
ACTTCACTTTTTCCTTTGTTGACGATGGTTCCTCATCTCAGTGCCAAGAATACGGGATGTGGATGTCTTTTACTAGACGATCTTCAAATGTGTTCCGATCTCCGAGTACA
AGCCCAATGGGTAATAATAGGATAATGATGGAGGCTTCACCAAATCAAATTGTTTCTCCATCACGCAATCAAGCAGCAAACGCGGGACAAGATGCAGGTCTGGACAACCA
ACAAAAATCACCTCCGATGACTGGTTCCGACAGCCGACCGATGGACATTTCATCGACGACGGAAGAACATGTAACAGTCCTTGTGAAGGTCAATACCCAATCAGTTAATG
CCCATCAAAATGACATTAATGTTATTGATCTCTCAAAAGTCAAGAAGAAACTTGAATATGAGATTGAAATCGTAAATTCACCGTCTGACAGTCAAGAGGCGGTTTATGCA
ATAAATGGGCTGAACGTTTTCTCGTTCTCTTCCGTTAGTGGGACGATGAAACAAGCTAAATCAGTGCATCCAATATTATCGAGTAAGGCTTCGGTTACCAGCTCAAATGA
TTATGCTCCAACAACCGACCTAAATGTTTATGCTCCAACGACTGACCAAAAGGCTTTTGCTCCATCAGCTGGCCCAAATATCAAGAGCTGGAAACGCAGAGCCCGACAAG
CGAATGTGGACCCTTGTTCAAGCAAGACCTTTGACGACCAAAAGAAAAGAATGGGAGAAGGTCTGGTAGGAGGAACACTAAAGCGGACCCGAACTGAGGAGAATGACATA
TCCAATATCAACAAACCAACGGTGGATGCTGTTGAGCAGTCCCACCGAGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGTCCGTTGAAGAATTCGGAGTCGTCAACGGAGGCGATGTGATGCAGCGCCTTCAAGGCGGCTTGGAACATTCCAAACAGTTTATTAGTGGAAAGGATGGGAC
TAAATCTGTACGTCTTGATGATCCTTTGGGTAGTGTTTGGACTCCTATCAAATATGAGAAGCTACCAGAAATTTGTTCTTATTGCGGCCGAATAGGACACGTTACAAAGA
ACTTCACTTTTTCCTTTGTTGACGATGGTTCCTCATCTCAGTGCCAAGAATACGGGATGTGGATGTCTTTTACTAGACGATCTTCAAATGTGTTCCGATCTCCGAGTACA
AGCCCAATGGGTAATAATAGGATAATGATGGAGGCTTCACCAAATCAAATTGTTTCTCCATCACGCAATCAAGCAGCAAACGCGGGACAAGATGCAGGTCTGGACAACCA
ACAAAAATCACCTCCGATGACTGGTTCCGACAGCCGACCGATGGACATTTCATCGACGACGGAAGAACATGTAACAGTCCTTGTGAAGGTCAATACCCAATCAGTTAATG
CCCATCAAAATGACATTAATGTTATTGATCTCTCAAAAGTCAAGAAGAAACTTGAATATGAGATTGAAATCGTAAATTCACCGTCTGACAGTCAAGAGGCGGTTTATGCA
ATAAATGGGCTGAACGTTTTCTCGTTCTCTTCCGTTAGTGGGACGATGAAACAAGCTAAATCAGTGCATCCAATATTATCGAGTAAGGCTTCGGTTACCAGCTCAAATGA
TTATGCTCCAACAACCGACCTAAATGTTTATGCTCCAACGACTGACCAAAAGGCTTTTGCTCCATCAGCTGGCCCAAATATCAAGAGCTGGAAACGCAGAGCCCGACAAG
CGAATGTGGACCCTTGTTCAAGCAAGACCTTTGACGACCAAAAGAAAAGAATGGGAGAAGGTCTGGTAGGAGGAACACTAAAGCGGACCCGAACTGAGGAGAATGACATA
TCCAATATCAACAAACCAACGGTGGATGCTGTTGAGCAGTCCCACCGAGAGCCATGA
Protein sequenceShow/hide protein sequence
MVVSVEEFGVVNGGDVMQRLQGGLEHSKQFISGKDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRSPST
SPMGNNRIMMEASPNQIVSPSRNQAANAGQDAGLDNQQKSPPMTGSDSRPMDISSTTEEHVTVLVKVNTQSVNAHQNDINVIDLSKVKKKLEYEIEIVNSPSDSQEAVYA
INGLNVFSFSSVSGTMKQAKSVHPILSSKASVTSSNDYAPTTDLNVYAPTTDQKAFAPSAGPNIKSWKRRARQANVDPCSSKTFDDQKKRMGEGLVGGTLKRTRTEENDI
SNINKPTVDAVEQSHREP