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Lag0035000 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035000
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDUF4283 domain-containing protein
Genome locationchr3:13468928..13469482
RNA-Seq ExpressionLag0035000
SyntenyLag0035000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039309.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-1533.7Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  +KIR NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK
         D E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P     + DG E+       +SPD L+ +    K
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1433.33Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG    G     E      + +E  IK+R NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPD
         D+E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P       +GSE+ + +  + S D
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPD

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-1533.7Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  +KIR NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK
         D E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P     + DG E+       +SPD L+ +    K
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK

TYK23598.1 hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa]1.8e-1436.43Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  IK+R NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGF
         D+E N+F  QVV   +G  L++R V +HG+F   AA  F
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGF

XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]4.8e-2850Show/hide
Query:  IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVLADSENEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKG
        IRNIPLHLW    FKAIGN LGGF  Y + NS F++C +VAIK++ NY GFIPAE+   D    F+A+VV+F+D   L  + VGIHG FS  AA  F++G
Subjt:  IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVLADSENEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKG

Query:  PNKCDFCPMDIWRIKDGSESPAVNVQ
          +     +D WR+++G   P VN+Q
Subjt:  PNKCDFCPMDIWRIKDGSESPAVNVQ

TrEMBL top hitse value%identityAlignment
A0A5A7TDG1 LINE-1 retrotransposable element ORF2 protein2.2e-1533.7Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  +KIR NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK
         D E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P     + DG E+       +SPD L+ +    K
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein2.2e-1533.7Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  +KIR NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK
         D E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P     + DG E+       +SPD L+ +    K
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein1.4e-1433.33Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG    G     E      + +E  IK+R NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPD
         D+E N+F  QVV   +G  L++R V +HG+F   AA  F       DF P       +GSE+ + +  + S D
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKGPNKCDFCPMDIWRIKDGSESPAVNVQTLSPD

A0A5D3DJE1 DUF4283 domain-containing protein8.5e-1536.43Show/hide
Query:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL
        ANLLCQNKGW                                 R IPLHLW+   F+ IG   GG     E      + +E  IK+R NY GF+PA V +
Subjt:  ANLLCQNKGW--------------------------------IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVL

Query:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGF
         D+E N+F  QVV   +G  L++R V +HG+F   AA  F
Subjt:  ADSE-NEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGF

A0A6J1D6X4 uncharacterized protein LOC1110181862.3e-2850Show/hide
Query:  IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVLADSENEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKG
        IRNIPLHLW    FKAIGN LGGF  Y + NS F++C +VAIK++ NY GFIPAE+   D    F+A+VV+F+D   L  + VGIHG FS  AA  F++G
Subjt:  IRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVLADSENEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYKG

Query:  PNKCDFCPMDIWRIKDGSESPAVNVQ
          +     +D WR+++G   P VN+Q
Subjt:  PNKCDFCPMDIWRIKDGSESPAVNVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCTCCTTTGTCAGAATAAAGGGTGGATTAGAAATATCCCTCTTCATTTATGGCACCGGGATGTGTTCAAAGCTATTGGAAATTGCCTTGGGGGCTTCGAGGT
ATATGTTGAAGGTAATTCAATGTTTGTTGACTGTGTGGAAGTGGCCATTAAGATCAGAGAGAACTATGGTGGTTTTATCCCCGCGGAGGTGGTGCTTGCTGATAGCGAAA
ATGAGTTCAGAGCACAAGTGGTGGCATTTCAAGACGGTAACCAGCTGGTGGATAGGGTGGTCGGAATCCATGGGAGTTTCTCCCCGTCGGCGGCCCATGGCTTCTACAAA
GGACCAAACAAATGTGACTTTTGTCCAATGGATATTTGGAGGATAAAAGATGGAAGTGAAAGTCCAGCGGTCAATGTGCAGACTTTATCCCCTGATCGTCTCCATCAGGT
ACGCTCTCGAGAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATCTCCTTTGTCAGAATAAAGGGTGGATTAGAAATATCCCTCTTCATTTATGGCACCGGGATGTGTTCAAAGCTATTGGAAATTGCCTTGGGGGCTTCGAGGT
ATATGTTGAAGGTAATTCAATGTTTGTTGACTGTGTGGAAGTGGCCATTAAGATCAGAGAGAACTATGGTGGTTTTATCCCCGCGGAGGTGGTGCTTGCTGATAGCGAAA
ATGAGTTCAGAGCACAAGTGGTGGCATTTCAAGACGGTAACCAGCTGGTGGATAGGGTGGTCGGAATCCATGGGAGTTTCTCCCCGTCGGCGGCCCATGGCTTCTACAAA
GGACCAAACAAATGTGACTTTTGTCCAATGGATATTTGGAGGATAAAAGATGGAAGTGAAAGTCCAGCGGTCAATGTGCAGACTTTATCCCCTGATCGTCTCCATCAGGT
ACGCTCTCGAGAAAAGTGA
Protein sequenceShow/hide protein sequence
MANLLCQNKGWIRNIPLHLWHRDVFKAIGNCLGGFEVYVEGNSMFVDCVEVAIKIRENYGGFIPAEVVLADSENEFRAQVVAFQDGNQLVDRVVGIHGSFSPSAAHGFYK
GPNKCDFCPMDIWRIKDGSESPAVNVQTLSPDRLHQVRSREK