CuGenDBv2

Gene ID	Lag0035006
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	chr3:13529361..13529666
RNA-Seq Expression	Lag0035006
Synteny	Lag0035006
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22128.1 AtpE [Cucurbita ficifolia]

9.5e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

ASY96329.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]

9.5e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

YP_004841789.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo]

9.5e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

YP_009751744.1 CF1 subunit epsilon [Herpetospermum pedunculosum]

7.3e-25

91.67

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVTVLVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

9.5e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1L0 ATP synthase epsilon chain, chloroplastic

4.6e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

A0A218KG49 ATP synthase epsilon chain, chloroplastic

4.6e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

A0A249RZA2 ATP synthase epsilon chain, chloroplastic

4.6e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

A0A6H0ERT6 ATP synthase epsilon chain, chloroplastic

3.5e-25

91.67

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVTVLVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

G3ETZ1 ATP synthase epsilon chain, chloroplastic

4.6e-25

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

SwissProt top hits

e value

%identity

Alignment

A0ZZ41 ATP synthase epsilon chain, chloroplastic

1.3e-24

82.86

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV
        +GGFARI NNE+T+LVNDAEK SDIDPQE  Q LEI EANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV

P09468 ATP synthase epsilon chain, chloroplastic

7.6e-25

82.86

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV
        +GGFARI NNE+T+LVNDAEK SDIDPQE  QTLEI EANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV

Q2PMU9 ATP synthase epsilon chain, chloroplastic

7.6e-25

86.76

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAIN
        +GGFARI+NNE+TVLVNDAEK SDIDPQE  QTLEI EANL KA+GKRQTIEANLALRRARTRVEAIN
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAIN

Q49KZ2 ATP synthase epsilon chain, chloroplastic

1.3e-24

81.43

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV
        +GGFARI NNE+T+LVNDAEK SDIDPQE  +TLE+ EANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

1.2e-27

90.28

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
        +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

5.4e-26

82.86

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Query:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV
        +GGFARI NNE+T+LVNDAEK SDIDPQE  QTLEI EANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDV

Sequences

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CDS sequence

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ATGTTGGAATCCTCCCCCGACGAGTTTTTGGAAACTAAATACGGACGCAGCCTGTGTCCCATCCTCTCCGTTGACAGGACTAGGGGCATAGGTGGTTTTGCTAGAATAGA
CAATAATGAGGTCACTGTTTTAGTAAACGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAACTCATCAAACTCTTGAAATAGTGGAAGCTAACTTGAGGAAAGCTC
AGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTTAGACGAGCTAGGACACGAGTAGAGGCTATCAATGACGTACCTAGTTAA

mRNA sequence

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Protein sequence

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MLESSPDEFLETKYGRSLCPILSVDRTRGIGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS

Lag0035006 (gene) of Sponge gourd (AG-4) v1 genome