CuGenDBv2

Gene ID	Lag0035011
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial
Genome location	chr3:13565157..13567974
RNA-Seq Expression	Lag0035011
Synteny	Lag0035011
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450314.1 PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]

2.1e-54

62.98

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ YV R  PLP WSSSDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAG+SFLAGG  GWTFGQEIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

2.1e-54

62.43

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  +R  IL  Y+ YV R+ PLP WSSSDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG+SFLAGGV GWTFGQEIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

2.4e-55

63.54

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y  YV REKPLP WSSSDVE FIASDPVHGPT                                     L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG+SFLAGGV GWTFG E+A+HWYQLYR+DTM +  KF+EWW NKNE
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

2.3e-53

61.33

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ +V REKPLP WS SDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGS+IGAVSTAGVAWKYS+SLHGAG+SFLAGG  GWTFG EIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

2.3e-53

61.33

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ +V REKPLP WS SDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGS+IGAVSTAGVAWKYS+SLHGAG+SFLAGG  GWTFG EIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

1.0e-54

62.98

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ YV R  PLP WSSSDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAG+SFLAGG  GWTFGQEIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

A0A5D3DY28 Succinate dehydrogenase subunit 6

1.0e-54

62.98

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ YV R  PLP WSSSDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAG+SFLAGG  GWTFGQEIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

1.2e-55

63.54

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y  YV REKPLP WSSSDVE FIASDPVHGPT                                     L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG+SFLAGGV GWTFG E+A+HWYQLYR+DTM +  KF+EWW NKNE
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

1.1e-53

61.33

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ +V REKPLP WS SDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGS+IGAVSTAGVAWKYS+SLHGAG+SFLAGG  GWTFG EIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

1.1e-53

61.33

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Query:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL
        MEDSSSQSFFR+HWEG+KEF  ER  IL  Y+ +V REKPLP WS SDVEEFIASDPVHGP                                     +L
Subjt:  MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLL

Query:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        KT  +AVNFGLTGS+IGAVSTAGVAWKYS+SLHGAG+SFLAGG  GWTFG EIA+HWYQLYR+DTM +  KF+EWW NK+E
Subjt:  KTVSKAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

4.1e-21

32.93

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Query:  HWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSKAVNFGLT
        H EG K    +    L Y+     R+KPLP W+ +DV+EFIASDPV+GP                                      LK + ++  F L 
Subjt:  HWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSKAVNFGLT

Query:  GSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNK
        G+++G     G+A KYSK+ HG  ++   G + G   G E+A HWYQLY+ D   +N +F+ WW +K
Subjt:  GSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNK

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

3.0e-40

47.16

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Query:  SQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSK
        S+SF  ++W G K+F  +R    + Y  +  R+ PLP WSSSDVEEFIASDPVHGPT                                     LKT  +
Subjt:  SQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSK

Query:  AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        AV FG+TG+ +GAVSTA  AWKYS+S HGA +SFL GGV GWTFGQE+A+H  QLY++DTM +  KF+EWW  K++
Subjt:  AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

2.1e-41

47.16

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Query:  SQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSK
        S+SF  ++W G K+F  +R    + Y  +  R+ PLP WSSSDVEEFIASDPVHGPT                                     LKT  +
Subjt:  SQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSK

Query:  AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE
        AV FG+TG+ +GAVSTA  AWKYS+S HGA +SFL GGV GWTFGQE+A+H  QLY++DTM +  KF+EWW  K++
Subjt:  AVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

Sequences

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CDS sequence

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ATGGAAGATTCGTCATCTCAATCCTTCTTCAGGAGGCACTGGGAGGGCTTCAAGGAATTTTGCTACGAGAGATCACCGATCCTCCAGTACTACAACACCTACGTTCTGCG
CGAGAAGCCCCTTCCTCCCTGGTCTAGCTCCGATGTTGAGGAGTTCATTGCTTCCGACCCCGTTCATGGCCCCACTGTAATTCATCGCTTACTTCCTTTTTCTTTTGCTC
CTTTTACTGCCTGCTTTATGACTCTGAAAATGATTGAAGGAAATTCTGAGTCAGGCCTTGTACTTTTCAATCTTCTATTGAAGACTGTCAGCAAAGCTGTAAACTTTGGT
CTTACAGGAAGTGTTATTGGAGCCGTATCAACTGCAGGTGTTGCATGGAAATACTCAAAAAGTTTGCATGGTGCTGGGATGTCGTTCCTAGCGGGAGGCGTACTCGGTTG
GACTTTTGGCCAAGAGATTGCAAGTCATTGGTATCAACTCTACAGGATGGACACCATGGAATCAAATTTTAAGTTTCTGGAGTGGTGGAGCAACAAGAACGAGTGA

mRNA sequence

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Protein sequence

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MEDSSSQSFFRRHWEGFKEFCYERSPILQYYNTYVLREKPLPPWSSSDVEEFIASDPVHGPTVIHRLLPFSFAPFTACFMTLKMIEGNSESGLVLFNLLLKTVSKAVNFG
LTGSVIGAVSTAGVAWKYSKSLHGAGMSFLAGGVLGWTFGQEIASHWYQLYRMDTMESNFKFLEWWSNKNE

Lag0035011 (gene) of Sponge gourd (AG-4) v1 genome