| GenBank top hits | e value | %identity | Alignment |
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| RVW48987.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 5.6e-40 | 34.03 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQ-SSVDNLNFIQENLVNL----------------
+++K I++ +A+GEP+ RDH+ +L GLGP+YN + S+ R D L V N+LL ++ +L Q SS +L F ++ ++
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQ-SSVDNLNFIQENLVNL----------------
Query: --SVSSNSNKRP------------PCPS---------------------------------------GWYMDFGATHHMTLDINNLQQPSPYYGGEQVVI
VSS+SN+ P P PS W+ D GATHH++ L PY G +QV I
Subjt: --SVSSNSNKRP------------PCPS---------------------------------------GWYMDFGATHHMTLDINNLQQPSPYYGGEQVVI
Query: GNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFASVSSLSSIQQPPTA
G+G S+ + H G+ F F SKT L+ VL+ P LS NLI+++K C+DN F EF+ +YF VK+ T+ ILL+G L GLY+ +S PP A
Subjt: GNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFASVSSLSSIQQPPTA
Query: LV--SSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
V SSF D ++WH RLGHLA I+ + L CN S
Subjt: LV--SSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
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| RVW60941.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.2e-37 | 32.12 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLN--------------------------
++IK A+ +AIGEP+S +D + +L GLG +YN +T+I R D L + ++LLA++ +LE+QSS++ ++
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLN--------------------------
Query: ----------------------FIQENLVNLSVSSNSNKR------------PPCPSGWYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHH
F Q +S S N+ + P WY+D GA+HH+T ++ NL SPY G ++V IGNG+ + + +
Subjt: ----------------------FIQENLVNLSVSSNSNKR------------PPCPSGWYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHH
Query: IGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYK--LFASVSSLSSIQQPPTALVSSFQD-
IGS S + + L V + P +S NLIS+AK CSDN A +EF+ F V + HT+ +L +G+LE GLYK +F++ SSI A S F
Subjt: IGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYK--LFASVSSLSSIQQPPTALVSSFQD-
Query: ----VSLWHRRLGHLAFSIVHRVLKFCNLS
LWH RLGH IV +V+ CN++
Subjt: ----VSLWHRRLGHLAFSIVHRVLKFCNLS
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| RVW64314.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 2.6e-37 | 31.12 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENL--------------------
+++K +A+ +AIGEP++ RD + +L GLG +YN + S+ R D L V ++LL ++ +L Q+SV N I NL
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENL--------------------
Query: -------VNLSVSSNSNKRPPC------------------------------------------------PS-----GWYMDFGATHHMTLDINNLQQPS
N S +S RP C PS W+ D GATHH++ I+ L
Subjt: -------VNLSVSSNSNKRPPC------------------------------------------------PS-----GWYMDFGATHHMTLDINNLQQPS
Query: PYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFA----
PY G ++V++GNG+ + + H G+T F P SSKT L VL+ P ++ NLIS+++ C+DN F EF+P +F VK+ T+ ILL+G LE GLY+ A
Subjt: PYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFA----
Query: SVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
S ++ S ++ +S +LWH RLGH A +I+ +L CN+S
Subjt: SVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
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| RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.5e-48 | 31.52 | Show/hide |
Query: RIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQEN----------------------
R+K + ++F+ IGEPLSYRD L ILEGL EY+ F+TSI NR+D P L +V +LL Y+ +L ++S NLNF Q N
Subjt: RIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQEN----------------------
Query: LVNLSVSSNSNKRPP----------------------------CPSG---------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIG
+N +N PP P+G WYMD GATHH T + ++ Y G+ ++GN + I + HIG
Subjt: LVNLSVSSNSNKRPP----------------------------CPSG---------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIG
Query: STVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL-------FASVSSLSSIQ----QPPTAL
+ S S K + L+ VL+ P +S LIS+ +L +DN+AFVEFYPT+FLVK+ T+ +LL+G LE GLYKL +SVSS S Q P A
Subjt: STVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL-------FASVSSLSSIQ----QPPTAL
Query: VSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLSFKDTGLIMTISFNFVLKSAFFWDYGLLFMRDCPLICTGESGLFA-DSISLPFWGQDRVGS--------
+S V LWH RLGH A +VH+VL+ CNL F ++ I + L P + + + D + WG + S
Subjt: VSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLSFKDTGLIMTISFNFVLKSAFFWDYGLLFMRDCPLICTGESGLFA-DSISLPFWGQDRVGS--------
Query: -WEHSLTRWNSLLPDIRVSRGPL------GPTGSSLGALSEIKIPLLLVFGE-----------FLGVLVKLIENFYKGSLLL----SHLHSSCVFSHTTP
+ + TR+ L + ++ P P+ S+ P L + + FLG + +KG L L H++ SC H
Subjt: -WEHSLTRWNSLLPDIRVSRGPL------GPTGSSLGALSEIKIPLLLVFGE-----------FLGVLVKLIENFYKGSLLL----SHLHSSCVFSHTTP
Query: SVTLPLPLPFENTPVAAPVHDSLSLPRSFSPSSPVFPSSSSSASPIRPDPPSPNPVSSPSSDSSISSASSPSSLSPSPLDPQPSAFNTHPMITRSKDGIF
V + LS P S SSP F S P+ P PS S+ SAS S SPS L P NTHPM+TRSK I+
Subjt: SVTLPLPLPFENTPVAAPVHDSLSLPRSFSPSSPVFPSSSSSASPIRPDPPSPNPVSSPSSDSSISSASSPSSLSPSPLDPQPSAFNTHPMITRSKDGIF
Query: KPRAWL
KP+ L
Subjt: KPRAWL
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| RVW72303.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera] | 2.5e-40 | 33.66 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENLVNLS-------------VSS
+++K A+ +AIGEP+S +D + +L GLG +YN +T+I R D + V ++LLA++ +LE+QSS++ + I N + S SS
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENLVNLS-------------VSS
Query: NSNKRPPCPSG-------------------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSH
S+ P +G WY+D A+HH+T + NL SPY ++V+IGNG+ + + + GS S S + L V + P +S
Subjt: NSNKRPPCPSG-------------------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSH
Query: NLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL---------FASVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKF
NLIS+AK CS+N A +EF F VK+LHT+ +L +GQLE GLY+ F ++ S+ +++ + V LWH RLGH + +IV ++++
Subjt: NLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL---------FASVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKF
Query: CNLSFK
CN+SF+
Subjt: CNLSFK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438EMU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.7e-40 | 34.03 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQ-SSVDNLNFIQENLVNL----------------
+++K I++ +A+GEP+ RDH+ +L GLGP+YN + S+ R D L V N+LL ++ +L Q SS +L F ++ ++
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQ-SSVDNLNFIQENLVNL----------------
Query: --SVSSNSNKRP------------PCPS---------------------------------------GWYMDFGATHHMTLDINNLQQPSPYYGGEQVVI
VSS+SN+ P P PS W+ D GATHH++ L PY G +QV I
Subjt: --SVSSNSNKRP------------PCPS---------------------------------------GWYMDFGATHHMTLDINNLQQPSPYYGGEQVVI
Query: GNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFASVSSLSSIQQPPTA
G+G S+ + H G+ F F SKT L+ VL+ P LS NLI+++K C+DN F EF+ +YF VK+ T+ ILL+G L GLY+ +S PP A
Subjt: GNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFASVSSLSSIQQPPTA
Query: LV--SSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
V SSF D ++WH RLGHLA I+ + L CN S
Subjt: LV--SSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
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| A0A438FLT9 Retrovirus-related Pol polyprotein from transposon RE1 | 5.6e-38 | 32.12 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLN--------------------------
++IK A+ +AIGEP+S +D + +L GLG +YN +T+I R D L + ++LLA++ +LE+QSS++ ++
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLN--------------------------
Query: ----------------------FIQENLVNLSVSSNSNKR------------PPCPSGWYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHH
F Q +S S N+ + P WY+D GA+HH+T ++ NL SPY G ++V IGNG+ + + +
Subjt: ----------------------FIQENLVNLSVSSNSNKR------------PPCPSGWYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHH
Query: IGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYK--LFASVSSLSSIQQPPTALVSSFQD-
IGS S + + L V + P +S NLIS+AK CSDN A +EF+ F V + HT+ +L +G+LE GLYK +F++ SSI A S F
Subjt: IGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYK--LFASVSSLSSIQQPPTALVSSFQD-
Query: ----VSLWHRRLGHLAFSIVHRVLKFCNLS
LWH RLGH IV +V+ CN++
Subjt: ----VSLWHRRLGHLAFSIVHRVLKFCNLS
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| A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1 | 7.1e-49 | 31.52 | Show/hide |
Query: RIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQEN----------------------
R+K + ++F+ IGEPLSYRD L ILEGL EY+ F+TSI NR+D P L +V +LL Y+ +L ++S NLNF Q N
Subjt: RIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQEN----------------------
Query: LVNLSVSSNSNKRPP----------------------------CPSG---------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIG
+N +N PP P+G WYMD GATHH T + ++ Y G+ ++GN + I + HIG
Subjt: LVNLSVSSNSNKRPP----------------------------CPSG---------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIG
Query: STVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL-------FASVSSLSSIQ----QPPTAL
+ S S K + L+ VL+ P +S LIS+ +L +DN+AFVEFYPT+FLVK+ T+ +LL+G LE GLYKL +SVSS S Q P A
Subjt: STVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL-------FASVSSLSSIQ----QPPTAL
Query: VSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLSFKDTGLIMTISFNFVLKSAFFWDYGLLFMRDCPLICTGESGLFA-DSISLPFWGQDRVGS--------
+S V LWH RLGH A +VH+VL+ CNL F ++ I + L P + + + D + WG + S
Subjt: VSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLSFKDTGLIMTISFNFVLKSAFFWDYGLLFMRDCPLICTGESGLFA-DSISLPFWGQDRVGS--------
Query: -WEHSLTRWNSLLPDIRVSRGPL------GPTGSSLGALSEIKIPLLLVFGE-----------FLGVLVKLIENFYKGSLLL----SHLHSSCVFSHTTP
+ + TR+ L + ++ P P+ S+ P L + + FLG + +KG L L H++ SC H
Subjt: -WEHSLTRWNSLLPDIRVSRGPL------GPTGSSLGALSEIKIPLLLVFGE-----------FLGVLVKLIENFYKGSLLL----SHLHSSCVFSHTTP
Query: SVTLPLPLPFENTPVAAPVHDSLSLPRSFSPSSPVFPSSSSSASPIRPDPPSPNPVSSPSSDSSISSASSPSSLSPSPLDPQPSAFNTHPMITRSKDGIF
V + LS P S SSP F S P+ P PS S+ SAS S SPS L P NTHPM+TRSK I+
Subjt: SVTLPLPLPFENTPVAAPVHDSLSLPRSFSPSSPVFPSSSSSASPIRPDPPSPNPVSSPSSDSSISSASSPSSLSPSPLDPQPSAFNTHPMITRSKDGIF
Query: KPRAWL
KP+ L
Subjt: KPRAWL
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| A0A438GJB1 Retrovirus-related Pol polyprotein from transposon RE2 | 1.2e-40 | 33.66 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENLVNLS-------------VSS
+++K A+ +AIGEP+S +D + +L GLG +YN +T+I R D + V ++LLA++ +LE+QSS++ + I N + S SS
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENLVNLS-------------VSS
Query: NSNKRPPCPSG-------------------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSH
S+ P +G WY+D A+HH+T + NL SPY ++V+IGNG+ + + + GS S S + L V + P +S
Subjt: NSNKRPPCPSG-------------------WYMDFGATHHMTLDINNLQQPSPYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSH
Query: NLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL---------FASVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKF
NLIS+AK CS+N A +EF F VK+LHT+ +L +GQLE GLY+ F ++ S+ +++ + V LWH RLGH + +IV ++++
Subjt: NLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKL---------FASVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKF
Query: CNLSFK
CN+SF+
Subjt: CNLSFK
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| A0A438JAU4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-37 | 31.12 | Show/hide |
Query: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENL--------------------
+++K +A+ +AIGEP++ RD + +L GLG +YN + S+ R D L V ++LL ++ +L Q+SV N I NL
Subjt: IRIKDIANKFSAIGEPLSYRDHLAYILEGLGPEYNPFMTSIKNRTDSPLLADVRNLLLAYDSKLEKQSSVDNLNFIQENL--------------------
Query: -------VNLSVSSNSNKRPPC------------------------------------------------PS-----GWYMDFGATHHMTLDINNLQQPS
N S +S RP C PS W+ D GATHH++ I+ L
Subjt: -------VNLSVSSNSNKRPPC------------------------------------------------PS-----GWYMDFGATHHMTLDINNLQQPS
Query: PYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFA----
PY G ++V++GNG+ + + H G+T F P SSKT L VL+ P ++ NLIS+++ C+DN F EF+P +F VK+ T+ ILL+G LE GLY+ A
Subjt: PYYGGEQVVIGNGRSIHVHHIGSTVFSSPFSSKTVLLSSVLYAPRLSHNLISIAKLCSDNQAFVEFYPTYFLVKELHTRTILLRGQLEGGLYKLFA----
Query: SVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
S ++ S ++ +S +LWH RLGH A +I+ +L CN+S
Subjt: SVSSLSSIQQPPTALVSSFQDVSLWHRRLGHLAFSIVHRVLKFCNLS
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