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Lag0035093 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035093
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzf-RVT domain-containing protein
Genome locationchr3:14773836..14774216
RNA-Seq ExpressionLag0035093
SyntenyLag0035093
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4361328.1 hypothetical protein G4B88_015920 [Cannabis sativa]9.1e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

KAF4368669.1 hypothetical protein F8388_003370 [Cannabis sativa]9.1e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.2e-1633.59Show/hide
Query:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEIL-NSVGLVRASCQLDIKDRWLSLADGMD-QDLPRI
        +W++ +P+K+K+F+W+S H  IPT  NL+   +     C +C D  E+  HA F C RA +IW  L   +  + A   +   + W SL + ++ +DL   
Subjt:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEIL-NSVGLVRASCQLDIKDRWLSLADGMD-QDLPRI

Query:  CVGAWAIWNDRNSSVQNRPIPPVATRSE
         +  W IWNDRNS +  + + PV  + E
Subjt:  CVGAWAIWNDRNSSVQNRPIPPVATRSE

XP_030498122.1 uncharacterized protein LOC115713779 [Cannabis sativa]2.6e-1638.14Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQDL--PRIC
        W++++PSK+++FVWK FHN +P    L R H+  S YCPLC  + ET  HALF CSRA E+W+I N + L          + +L    G    L   +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQDL--PRIC

Query:  VGAWAIWNDRNSSVQNRP
           W+IW +RN+   ++P
Subjt:  VGAWAIWNDRNSSVQNRP

XP_030508858.1 uncharacterized protein LOC115723499 [Cannabis sativa]9.1e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248745.8e-1733.59Show/hide
Query:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEIL-NSVGLVRASCQLDIKDRWLSLADGMD-QDLPRI
        +W++ +P+K+K+F+W+S H  IPT  NL+   +     C +C D  E+  HA F C RA +IW  L   +  + A   +   + W SL + ++ +DL   
Subjt:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEIL-NSVGLVRASCQLDIKDRWLSLADGMD-QDLPRI

Query:  CVGAWAIWNDRNSSVQNRPIPPVATRSE
         +  W IWNDRNS +  + + PV  + E
Subjt:  CVGAWAIWNDRNSSVQNRPIPPVATRSE

A0A7J6ESF6 zf-RVT domain-containing protein4.4e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

A0A7J6FFK9 zf-RVT domain-containing protein4.4e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

A0A803NJJ8 Uncharacterized protein4.4e-1737.9Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC
        W++K+PSK+++FVWK FHN+IP    L R H+  + YCPLC  + ET  HALF C+RA E+W  L+S+ L          + +L  A  +    D  +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLA--DGMDQDLPRIC

Query:  VGAWAIWNDRNSSVQNR-PIPPVA
           W+IW +RN+   ++ P  P A
Subjt:  VGAWAIWNDRNSSVQNR-PIPPVA

A0A803PF68 Uncharacterized protein1.3e-1638.14Show/hide
Query:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQDL--PRIC
        W++++PSK+++FVWK FHN +P    L R H+  S YCPLC  + ET  HALF CSRA E+W+I N + L          + +L    G    L   +  
Subjt:  WRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQDL--PRIC

Query:  VGAWAIWNDRNSSVQNRP
           W+IW +RN+   ++P
Subjt:  VGAWAIWNDRNSSVQNRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.0e-0929.6Show/hide
Query:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQD------
        +W + I  K+K F+W++   ++ T   L    M +   CP CH E E+ +HALF C  A   W + +S  L+R     +  +  +S      QD      
Subjt:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQD------

Query:  ---LPRICVGAWAIWNDRNSSVQNR
           LP   +  W IW  RN+ V N+
Subjt:  ---LPRICVGAWAIWNDRNSSVQNR

AT3G25270.1 Ribonuclease H-like superfamily protein8.2e-0826.56Show/hide
Query:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIW-------EILNSVG--------LVRASCQLDIKDRWL
        +W++K   K+K F+WK    ++ T  NL R H+     C  C  E ET+ H  F C  A ++W       + L + G        L+ +SC  + + +  
Subjt:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIW-------EILNSVG--------LVRASCQLDIKDRWL

Query:  SLADGMDQDLPRICVGAWAIWNDRNSSV
        +LA  +           W +W  RN  V
Subjt:  SLADGMDQDLPRICVGAWAIWNDRNSSV

AT4G29090.1 Ribonuclease H-like superfamily protein5.9e-0632.31Show/hide
Query:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEI
        +W+ +   K++ F+WK   NS+P    L   H+     C  C    ET +H LF+C+ A   W I
Subjt:  MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGATGAAGATTCCATCCAAAGTGAAAGTGTTTGTGTGGAAATCCTTCCACAATTCTATACCCACTATGGTCAATCTTATGCGTCACCATATGCCGGTGAGTGG
ATACTGCCCCCTATGTCATGATGAATTGGAGACGACAGATCATGCCCTCTTTAGGTGTTCAAGAGCTATGGAGATATGGGAGATATTAAATTCGGTGGGGCTTGTGCGAG
CTTCTTGCCAATTGGACATTAAAGATCGATGGTTGAGCTTAGCTGATGGGATGGATCAAGATTTACCTCGTATCTGCGTGGGGGCTTGGGCTATTTGGAATGATAGAAAT
AGTAGTGTGCAGAATCGCCCAATTCCTCCAGTGGCCACCCGTAGCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGGATGAAGATTCCATCCAAAGTGAAAGTGTTTGTGTGGAAATCCTTCCACAATTCTATACCCACTATGGTCAATCTTATGCGTCACCATATGCCGGTGAGTGG
ATACTGCCCCCTATGTCATGATGAATTGGAGACGACAGATCATGCCCTCTTTAGGTGTTCAAGAGCTATGGAGATATGGGAGATATTAAATTCGGTGGGGCTTGTGCGAG
CTTCTTGCCAATTGGACATTAAAGATCGATGGTTGAGCTTAGCTGATGGGATGGATCAAGATTTACCTCGTATCTGCGTGGGGGCTTGGGCTATTTGGAATGATAGAAAT
AGTAGTGTGCAGAATCGCCCAATTCCTCCAGTGGCCACCCGTAGCGAATAG
Protein sequenceShow/hide protein sequence
MWRMKIPSKVKVFVWKSFHNSIPTMVNLMRHHMPVSGYCPLCHDELETTDHALFRCSRAMEIWEILNSVGLVRASCQLDIKDRWLSLADGMDQDLPRICVGAWAIWNDRN
SSVQNRPIPPVATRSE