; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035114 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035114
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:15172096..15173320
RNA-Seq ExpressionLag0035114
SyntenyLag0035114
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO59710.1 reverse transcriptase [Corchorus capsularis]2.9e-1727.05Show/hide
Query:  SSALVDD-WARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR---------I
        + AL D  W +L+LT EEE+  V+ D            F ++G+L    P   + M +  +  W++   + +  L  N+F+F+F  EADR          
Subjt:  SSALVDD-WARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR---------I

Query:  MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV---------------LSELCSFCGIIGHISRDCAQFYRSKCGFSSPPQYGDWLR
        MAE++G  +G    VD  +    W   LR RV ID+T PLRR + +               L E C  CG IGH   DCA+            QYGDWLR
Subjt:  MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV---------------LSELCSFCGIIGHISRDCAQFYRSKCGFSSPPQYGDWLR

Query:  FTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPD--PAVFVDEAPRKIQKGIQINEPIKGNDQRMPATLFPADYSLSDGLNVSTKGK
             + P     G           + +  A+    +     A+F +E      +   +   I  ND+     +  A +  + G  V  KGK
Subjt:  FTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPD--PAVFVDEAPRKIQKGIQINEPIKGNDQRMPATLFPADYSLSDGLNVSTKGK

OMO61345.1 reverse transcriptase [Corchorus capsularis]6.4e-1729.51Show/hide
Query:  SSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR-----------
        +  L D W   +LT EEE + VA D   VD +      CL+GKLL   P+  EVMR    + WK+  GLQV  +G+N+FIFQF ++ ++           
Subjt:  SSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR-----------

Query:  ------------------------------------IMAERIGNAI----GVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV-------------
                                             M E IG  I    G  E++D     + WG  LR R R+++T PLRRGM +             
Subjt:  ------------------------------------IMAERIGNAI----GVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV-------------

Query:  ---LSELCSFCGIIGHISRDC--AQFYRSKCGFSSPPQYGDWLR
           L + C  CG + H+  +C  A   R   G     +YG WLR
Subjt:  ---LSELCSFCGIIGHISRDC--AQFYRSKCGFSSPPQYGDWLR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.3e-2129.76Show/hide
Query:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEADR--------
        M +S L+++W    LTSEE++I+V  D  A++ +G+ L   L+ KLL    +   V++   ++AWK+D     VD +G N+F+F F   +DR        
Subjt:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEADR--------

Query:  -------------------------------------------IMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------
                                                    MA R+GNAIG+FEDV++      WG+ LR+RVR D+  PL RG+ +          
Subjt:  -------------------------------------------IMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------

Query:  -------LSELCSFCGIIGHISRDCAQFYRSKC---GFSSPPQYGDWLRFTG
               L +    CG + HI +DC     S C     S   QYG WLRF G
Subjt:  -------LSELCSFCGIIGHISRDCAQFYRSKC---GFSSPPQYGDWLRFTG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.0e-3035.6Show/hide
Query:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEAD----------
        MD   L+ DW +  LTSEE+EI++  D +AV  + Q L + L+GKLL    + A+V+ +   +AWK++H L V+ +GKN+F+F F  E D          
Subjt:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEAD----------

Query:  -----------------------------------------RIMAERIGNAIGVFEDVD-NRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------
                                                 + MA R+GNAIG F DVD N  GF  WGASLRIRV ID+T PLRRG+ +          
Subjt:  -----------------------------------------RIMAERIGNAIGVFEDVD-NRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------

Query:  -------LSELCSFCGIIGHISRDC-AQFYRSKCGFSSPPQYGDWLRFTG
               L + C FCG+IGH S DC A++  ++    +  +YG WLRF G
Subjt:  -------LSELCSFCGIIGHISRDC-AQFYRSKCGFSSPPQYGDWLRFTG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.8e-1825.27Show/hide
Query:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEAD--------------
        L+++W    LTSEEEE ++  D  A   +G  L   L+GKL    P+   VM+   R AWK++ +  +V  LG N+F+F F    D              
Subjt:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEAD--------------

Query:  -------------------------------------RIMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSVLSELCSFCGIIG---
                                             R MA R+GNA+G FE+ D       WG++LR+RV +D++ PLRRG+ +     +  G IG   
Subjt:  -------------------------------------RIMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSVLSELCSFCGIIG---

Query:  -HISRDCAQFYRSKCGFSS---PPQYGDWLRFTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPDPAVFVDEAPRKIQKGIQINEPIKGNDQRMP
          I  +    +   CG SS     QYG WLR+ G        +    E + D+    +   +   SP    +  V  AP      I +  P+    ++  
Subjt:  -HISRDCAQFYRSKCGFSS---PPQYGDWLRFTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPDPAVFVDEAPRKIQKGIQINEPIKGNDQRMP

Query:  ATLFPADYSLSDGLNVSTKGKEKVIEMENTFRGGLPAFASLWRP-KSSRWNIRPASATEVQRISVPVG
                    G   S +GK  V+  E   R  +   ++L  P KS   +++P+ +  + R+ +  G
Subjt:  ATLFPADYSLSDGLNVSTKGKEKVIEMENTFRGGLPAFASLWRP-KSSRWNIRPASATEVQRISVPVG

TrEMBL top hitse value%identityAlignment
A0A1R3GNW3 Reverse transcriptase1.4e-1727.05Show/hide
Query:  SSALVDD-WARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR---------I
        + AL D  W +L+LT EEE+  V+ D            F ++G+L    P   + M +  +  W++   + +  L  N+F+F+F  EADR          
Subjt:  SSALVDD-WARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADR---------I

Query:  MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV---------------LSELCSFCGIIGHISRDCAQFYRSKCGFSSPPQYGDWLR
        MAE++G  +G    VD  +    W   LR RV ID+T PLRR + +               L E C  CG IGH   DCA+            QYGDWLR
Subjt:  MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV---------------LSELCSFCGIIGHISRDCAQFYRSKCGFSSPPQYGDWLR

Query:  FTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPD--PAVFVDEAPRKIQKGIQINEPIKGNDQRMPATLFPADYSLSDGLNVSTKGK
             + P     G           + +  A+    +     A+F +E      +   +   I  ND+     +  A +  + G  V  KGK
Subjt:  FTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPD--PAVFVDEAPRKIQKGIQINEPIKGNDQRMPATLFPADYSLSDGLNVSTKGK

A0A2N9E6P9 CCHC-type domain-containing protein1.1e-1728.75Show/hide
Query:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADRI-------------
        LV++W + SLT E+E      + +A+  S      CLLGKL+   P     ++      W +  G +   +G N+FIFQF +E +R              
Subjt:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADRI-------------

Query:  --------------------------------------MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------------
                                                +R+GNA+G    VD   G + WG  LRIR+ +D T P+ RG  V                
Subjt:  --------------------------------------MAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------------

Query:  LSELCSFCGIIGHISRDCAQFYRSKC-GFSSPPQYGDWLR
        L  LC FCG++GH  RDC    RS+C G +   QYG WLR
Subjt:  LSELCSFCGIIGHISRDCAQFYRSKC-GFSSPPQYGDWLR

A0A6J1BSZ1 uncharacterized protein LOC1110054812.1e-2129.76Show/hide
Query:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEADR--------
        M +S L+++W    LTSEE++I+V  D  A++ +G+ L   L+ KLL    +   V++   ++AWK+D     VD +G N+F+F F   +DR        
Subjt:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEADR--------

Query:  -------------------------------------------IMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------
                                                    MA R+GNAIG+FEDV++      WG+ LR+RVR D+  PL RG+ +          
Subjt:  -------------------------------------------IMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------

Query:  -------LSELCSFCGIIGHISRDCAQFYRSKC---GFSSPPQYGDWLRFTG
               L +    CG + HI +DC     S C     S   QYG WLRF G
Subjt:  -------LSELCSFCGIIGHISRDCAQFYRSKC---GFSSPPQYGDWLRFTG

A0A6J1DU55 uncharacterized protein LOC1110231355.0e-3135.6Show/hide
Query:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEAD----------
        MD   L+ DW +  LTSEE+EI++  D +AV  + Q L + L+GKLL    + A+V+ +   +AWK++H L V+ +GKN+F+F F  E D          
Subjt:  MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEAD----------

Query:  -----------------------------------------RIMAERIGNAIGVFEDVD-NRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------
                                                 + MA R+GNAIG F DVD N  GF  WGASLRIRV ID+T PLRRG+ +          
Subjt:  -----------------------------------------RIMAERIGNAIGVFEDVD-NRMGFLFWGASLRIRVRIDLTHPLRRGMSV----------

Query:  -------LSELCSFCGIIGHISRDC-AQFYRSKCGFSSPPQYGDWLRFTG
               L + C FCG+IGH S DC A++  ++    +  +YG WLRF G
Subjt:  -------LSELCSFCGIIGHISRDC-AQFYRSKCGFSSPPQYGDWLRFTG

A0A6J1DX30 uncharacterized protein LOC1110248742.8e-1825.27Show/hide
Query:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEAD--------------
        L+++W    LTSEEEE ++  D  A   +G  L   L+GKL    P+   VM+   R AWK++ +  +V  LG N+F+F F    D              
Subjt:  LVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKID-HGLQVDRLGKNMFIFQFVNEAD--------------

Query:  -------------------------------------RIMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSVLSELCSFCGIIG---
                                             R MA R+GNA+G FE+ D       WG++LR+RV +D++ PLRRG+ +     +  G IG   
Subjt:  -------------------------------------RIMAERIGNAIGVFEDVDNRMGFLFWGASLRIRVRIDLTHPLRRGMSVLSELCSFCGIIG---

Query:  -HISRDCAQFYRSKCGFSS---PPQYGDWLRFTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPDPAVFVDEAPRKIQKGIQINEPIKGNDQRMP
          I  +    +   CG SS     QYG WLR+ G        +    E + D+    +   +   SP    +  V  AP      I +  P+    ++  
Subjt:  -HISRDCAQFYRSKCGFSS---PPQYGDWLRFTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPDPAVFVDEAPRKIQKGIQINEPIKGNDQRMP

Query:  ATLFPADYSLSDGLNVSTKGKEKVIEMENTFRGGLPAFASLWRP-KSSRWNIRPASATEVQRISVPVG
                    G   S +GK  V+  E   R  +   ++L  P KS   +++P+ +  + R+ +  G
Subjt:  ATLFPADYSLSDGLNVSTKGKEKVIEMENTFRGGLPAFASLWRP-KSSRWNIRPASATEVQRISVPVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCTGCTCTGGTCGACGATTGGGCTCGTTTGAGCTTAACTTCGGAGGAAGAAGAAATTTCAGTGGCAGCTGATAGAGAAGCGGTAGATCGATCTGGTCAATT
GCTGGGTTTTTGTTTGTTGGGCAAGCTTTTGTGCCACAGTCCATTGGGAGCAGAGGTGATGCGGAAGAATTTTAGGGTTGCGTGGAAAATCGATCATGGTTTGCAGGTGG
ATCGACTGGGGAAGAATATGTTTATCTTCCAGTTTGTGAACGAGGCGGATCGGATTATGGCGGAACGAATTGGCAATGCTATTGGCGTTTTTGAAGATGTTGATAATAGG
ATGGGCTTCCTCTTTTGGGGTGCTAGTTTGCGGATCCGGGTTCGGATTGACTTGACCCATCCTCTTCGCCGCGGTATGAGTGTTTTGTCGGAGTTATGCTCCTTCTGTGG
TATTATCGGACATATTTCTCGCGATTGTGCTCAGTTCTATCGATCGAAGTGTGGCTTTAGTTCTCCTCCGCAATACGGGGATTGGTTACGATTTACAGGGAAGGGGATGT
TTCCGCATCATTTGGTGACAGGAGAGAATGAGAGTGTTTCTGATCGGGATAATCCTCTGAGCCAGCTGTTAGCTATTGAAGTGTCGCCGACACCGGATCCTGCAGTTTTC
GTGGATGAGGCTCCTCGGAAAATCCAAAAAGGGATCCAGATTAATGAACCGATCAAGGGGAATGATCAGAGGATGCCTGCAACTTTGTTTCCGGCTGATTACTCTCTATC
CGACGGGCTAAATGTGTCTACCAAAGGAAAAGAGAAAGTGATTGAGATGGAAAATACGTTCAGAGGAGGTCTTCCAGCCTTTGCGTCCCTGTGGCGACCGAAAAGTTCCC
GATGGAATATTCGTCCGGCTTCTGCAACGGAGGTGCAACGGATTTCAGTCCCGGTGGGCGTTACAACTGATGATGGACTAAAATTAATGCATCCGTTTGGTTTGAATGAT
GATGATGGTCGAATGATTATGAGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTCTGCTCTGGTCGACGATTGGGCTCGTTTGAGCTTAACTTCGGAGGAAGAAGAAATTTCAGTGGCAGCTGATAGAGAAGCGGTAGATCGATCTGGTCAATT
GCTGGGTTTTTGTTTGTTGGGCAAGCTTTTGTGCCACAGTCCATTGGGAGCAGAGGTGATGCGGAAGAATTTTAGGGTTGCGTGGAAAATCGATCATGGTTTGCAGGTGG
ATCGACTGGGGAAGAATATGTTTATCTTCCAGTTTGTGAACGAGGCGGATCGGATTATGGCGGAACGAATTGGCAATGCTATTGGCGTTTTTGAAGATGTTGATAATAGG
ATGGGCTTCCTCTTTTGGGGTGCTAGTTTGCGGATCCGGGTTCGGATTGACTTGACCCATCCTCTTCGCCGCGGTATGAGTGTTTTGTCGGAGTTATGCTCCTTCTGTGG
TATTATCGGACATATTTCTCGCGATTGTGCTCAGTTCTATCGATCGAAGTGTGGCTTTAGTTCTCCTCCGCAATACGGGGATTGGTTACGATTTACAGGGAAGGGGATGT
TTCCGCATCATTTGGTGACAGGAGAGAATGAGAGTGTTTCTGATCGGGATAATCCTCTGAGCCAGCTGTTAGCTATTGAAGTGTCGCCGACACCGGATCCTGCAGTTTTC
GTGGATGAGGCTCCTCGGAAAATCCAAAAAGGGATCCAGATTAATGAACCGATCAAGGGGAATGATCAGAGGATGCCTGCAACTTTGTTTCCGGCTGATTACTCTCTATC
CGACGGGCTAAATGTGTCTACCAAAGGAAAAGAGAAAGTGATTGAGATGGAAAATACGTTCAGAGGAGGTCTTCCAGCCTTTGCGTCCCTGTGGCGACCGAAAAGTTCCC
GATGGAATATTCGTCCGGCTTCTGCAACGGAGGTGCAACGGATTTCAGTCCCGGTGGGCGTTACAACTGATGATGGACTAAAATTAATGCATCCGTTTGGTTTGAATGAT
GATGATGGTCGAATGATTATGAGAGAGTAA
Protein sequenceShow/hide protein sequence
MDSSALVDDWARLSLTSEEEEISVAADREAVDRSGQLLGFCLLGKLLCHSPLGAEVMRKNFRVAWKIDHGLQVDRLGKNMFIFQFVNEADRIMAERIGNAIGVFEDVDNR
MGFLFWGASLRIRVRIDLTHPLRRGMSVLSELCSFCGIIGHISRDCAQFYRSKCGFSSPPQYGDWLRFTGKGMFPHHLVTGENESVSDRDNPLSQLLAIEVSPTPDPAVF
VDEAPRKIQKGIQINEPIKGNDQRMPATLFPADYSLSDGLNVSTKGKEKVIEMENTFRGGLPAFASLWRPKSSRWNIRPASATEVQRISVPVGVTTDDGLKLMHPFGLND
DDGRMIMRE