CuGenDBv2

Gene ID	Lag0035119
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon gag protein
Genome location	chr3:15287680..15289558
RNA-Seq Expression	Lag0035119
Synteny	Lag0035119
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.7e-35

66.41

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EEENQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.4e-34

64.89

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Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+H+ +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-34

65.65

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Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EEENQC  ST+ R STF+RL++STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK  V INTEGSL +   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.4e-34

64.89

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST TR S F+RL++STSKK R STS FDR+K+ NDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK +V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.4e-34

64.89

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+H+ +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQ06 Retrotransposon gag protein

1.8e-35

66.41

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EEENQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

A0A5A7UI09 Retrotransposon gag protein

1.2e-34

64.89

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+H+ +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

A0A5A7VDY3 Ty3-gypsy retrotransposon protein

8.9e-35

65.65

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Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EEENQC  ST+ R STF+RL++STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK  V INTEGSL +   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

A0A5D3BLW3 Retrotransposon gag protein

1.2e-34

64.89

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST TR S F+RL++STSKK R STS FDR+K+ NDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+HS +PSRMKRK +V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

A0A5D3CCI8 Retrotransposon gag protein

1.2e-34

64.89

Show/hide

Query:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND
        EEVDNS + +QRTSVF+RIKP TTR SVFQR+SMAT EE+NQC  ST+ R S F+RL++STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF
        +K+H+ +PSRMKRK  V INTEGSL V   F
Subjt:  EKLHSSIPSRMKRKFYVLINTEGSLKVSRCF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAACTTATAGCTTCTTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTC
CGTCTTCAATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGAC
CTTCAACTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAAGCTAAAAGAAAGATGGAC
AACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGATGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTATGTTCTCATAAATACGGAAGGTTC
CTTGAAGGTTTCACGCTGCTTCGCTGAAGGAATTTCCCCTAAGTTCGATGTTTCTCACGTTGATGCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTTCTCCTACACTT
CGCTGCAGTTTCTCTCCAAGTCTGAAGGTTCTCTTCCGCTTCGCCGCAGTTCCTTGTTCAAGTTTGAAGTTTCTCTCGCGCTTCGCTACAATTCCTTCTCTCCAAGTTCG
AAGGATCACAAAGTTCGAAGGATCACAAAGTTCGAAGGTTCTCCTGCGCTTCGTTGCAGTTACTTCTCTTTAAGTTCGAAGGTTTCTCCTGCGCTTCGTTGCAGTTCCTT
CTCTTCAAATTCGAAGGTTCTTCCGCGCTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTGCGCTTCGCTGCAATTTCTTCTCTTCAAGTTCGAAGGTTTCT
CCTACGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTACGCTTCGCTACAGTTTCTTCCTCAAAGTTCAAAGATTTTCCGTCGCTGTCGTTTCTTCCTCA
AATTTGAAGGTCCTTCATCGCCGTCGTTTCTTCTTCAAGTTTGAAGGTCCCTCATCGTCTTCATACCTTCTTCAAGTTGAGAATTTCTATCGTTCATTCATCAAGCTCGA
AGGTTGGCGGTTGGCGGCTTCGGCCTCGCTTCATCTTCAAATGTTGGTGGTTGACAGCTTCGACCTTGCTTCATCTTCAAAGGTTGGCGGTGCAAGTGGGCAAGTGACCA
GCCTGCATTCCGCTTGA

mRNA sequence

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Protein sequence

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MNSSPKLSTKRKKKLIASYCIDVEEVDNSKKGEQRTSVFNRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSTFQRLNVSTSKKSRSSTSVFDRLKVTNDQAKRKMD
NLELKLFDEVNNDEKLHSSIPSRMKRKFYVLINTEGSLKVSRCFAEGISPKFDVSHVDALQFLLSKFEGFSYTSLQFLSKSEGSLPLRRSSLFKFEVSLALRYNSFSPSS
KDHKVRRITKFEGSPALRCSYFSLSSKVSPALRCSSFSSNSKVLPRFAVVPSLQVRRFSCASLQFLLFKFEGFSYASLQFLLSKFEGSPTLRYSFFLKVQRFSVAVVSSS
NLKVLHRRRFFFKFEGPSSSSYLLQVENFYRSFIKLEGWRLAASASLHLQMLVVDSFDLASSSKVGGASGQVTSLHSA

Lag0035119 (gene) of Sponge gourd (AG-4) v1 genome