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Lag0035127 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035127
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:15375180..15375680
RNA-Seq ExpressionLag0035127
SyntenyLag0035127
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3460126.1 reverse transcriptase [Gossypium australe]4.4e-1136.05Show/hide
Query:  VYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQ-TRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQEL
        VYH   I SDHRP+L +    +L   +  P RF   WTK+   KD+V   W+ S +   T    T   +  NR T G    Y G+ +  + +    IQ+ 
Subjt:  VYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQ-TRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQEL

Query:  LSRNDRHNLQALS-EKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
        L +++   L  L  E   ELE++L   E+ W+QKAR +W+Q+GDRNT
Subjt:  LSRNDRHNLQALS-EKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]8.3e-1840.88Show/hide
Query:  VKVYHQALIASDHRPLLAEWM---EDKLGLVK-NLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEK
        +++ H   +ASDHRP+LAEW+   E  +G  K   P RFEE W  + ECK+IV +VW        T  Q +   CL  L   +  + GGS+RGAI RKE 
Subjt:  VKVYHQALIASDHRPLLAEWM---EDKLGLVK-NLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEK

Query:  EIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQ
        EIQ ++          L E + +LE LLE+ E YW+Q
Subjt:  EIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQ

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]4.7e-1332.08Show/hide
Query:  SDHRPLLAEWME---DKLGLVKNLPR-RFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQELLSRND
        SDHR L+    E   + L +++  PR RFE +W K  EC+ I+   W +S+      I +  + C   L++ S  K+     G++  K KE  + ++  +
Subjt:  SDHRPLLAEWME---DKLGLVKNLPR-RFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQELLSRND

Query:  RHNLQALS-------EKEIELENLLEDVEIYWKQKAREEWIQWGDRNTMVLYESQQTKE
         HNLQ LS         E +L +LL   E+YWKQ++R +W+Q GD+NT   ++  +T++
Subjt:  RHNLQALS-------EKEIELENLLEDVEIYWKQKAREEWIQWGDRNTMVLYESQQTKE

XP_030938668.1 uncharacterized protein LOC115963692 [Quercus lobata]4.4e-1128.85Show/hide
Query:  QDKCNLVKVYHQALIASDHRPLL-AEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQA--SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAI
        +DK   V+V H     SDH P+L    +     L K +P RFEE W  + +C++I+   W +   N      +  + K C   L   S   +G S +  +
Subjt:  QDKCNLVKVYHQALIASDHRPLL-AEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQA--SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAI

Query:  ARKEKEIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
          K+K ++EL  +N   N++ +   + E+ N++   E++W+Q++R  W+  GD+NT
Subjt:  ARKEKEIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

XP_030939698.1 uncharacterized protein LOC115964550 [Quercus lobata]4.4e-1128.85Show/hide
Query:  QDKCNLVKVYHQALIASDHRPLL-AEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQA--SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAI
        +DK   V+V H     SDH P+L    +     L K +P RFEE W  + +C++I+   W +   N      +  + K C   L   S   +G S +  +
Subjt:  QDKCNLVKVYHQALIASDHRPLL-AEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQA--SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAI

Query:  ARKEKEIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
          K+K ++EL  +N   N++ +   + E+ N++   E++W+Q++R  W+  GD+NT
Subjt:  ARKEKEIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

TrEMBL top hitse value%identityAlignment
A0A2N9EEA9 CCHC-type domain-containing protein3.3e-1232.43Show/hide
Query:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQT--RTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQ
        KV H A ++SDH PL+ E+++    + ++   RFE +W K  + KD+V Q W     + +   Q   + K C   L   S  ++ G +   I  K K +Q
Subjt:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQT--RTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQ

Query:  ELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
        EL + N       +   + E+ +LLE  EI+W+Q++R  W+Q GD+NT
Subjt:  ELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

A0A2N9HLX2 Uncharacterized protein3.6e-1134.9Show/hide
Query:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPR-RFEEVWTKYGECKDIVHQVWQA-SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEKEI-
        +VYH  ++ SDHRP+  E       L     R RFEE+WT +  C+D + + W+   +      +  + K C   L   S   + GSIR +IA K + + 
Subjt:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPR-RFEEVWTKYGECKDIVHQVWQA-SNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEKEI-

Query:  QELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
        QE   R +  N+Q + +  IEL +L    E  WKQ++R  W+Q GDRNT
Subjt:  QELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

A0A2N9HND5 CCHC-type domain-containing protein3.3e-1232.43Show/hide
Query:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQT--RTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQ
        KV H A ++SDH PL+ E+++    + ++   RFE +W K  + KD+V Q W     + +   Q   + K C   L   S  ++ G +   I  K K +Q
Subjt:  KVYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQT--RTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQ

Query:  ELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
        EL + N       +   + E+ +LLE  EI+W+Q++R  W+Q GD+NT
Subjt:  ELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

A0A5B6UTQ5 Reverse transcriptase2.1e-1136.05Show/hide
Query:  VYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQ-TRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQEL
        VYH   I SDHRP+L +    +L   +  P RF   WTK+   KD+V   W+ S +   T    T   +  NR T G    Y G+ +  + +    IQ+ 
Subjt:  VYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQ-TRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQEL

Query:  LSRNDRHNLQALS-EKEIELENLLEDVEIYWKQKAREEWIQWGDRNT
        L +++   L  L  E   ELE++L   E+ W+QKAR +W+Q+GDRNT
Subjt:  LSRNDRHNLQALS-EKEIELENLLEDVEIYWKQKAREEWIQWGDRNT

A0A6J1DRA0 uncharacterized protein LOC1110224234.0e-1840.88Show/hide
Query:  VKVYHQALIASDHRPLLAEWM---EDKLGLVK-NLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEK
        +++ H   +ASDHRP+LAEW+   E  +G  K   P RFEE W  + ECK+IV +VW        T  Q +   CL  L   +  + GGS+RGAI RKE 
Subjt:  VKVYHQALIASDHRPLLAEWM---EDKLGLVK-NLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEK

Query:  EIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQ
        EIQ ++          L E + +LE LLE+ E YW+Q
Subjt:  EIQELLSRNDRHNLQALSEKEIELENLLEDVEIYWKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGATAAATGCAATTTGGTTAAAGTTTATCACCAGGCTCTTATTGCCTCTGACCACAGGCCTTTATTGGCAGAATGGATGGAAGATAAGCTAGGTTTGGTAAAAAA
TCTCCCTCGAAGATTCGAAGAAGTTTGGACTAAATACGGGGAGTGTAAGGACATTGTACACCAAGTTTGGCAGGCCTCGAATCATCAAGTTAACACCACAATTCAAACAA
GGACTAAAGAGTGCCTCAATAGACTAACTATTGGGAGTCATTCCAAATATGGTGGATCGATTAGAGGAGCTATTGCAAGAAAAGAAAAAGAAATCCAGGAACTTTTATCT
CGAAATGATCGTCATAATCTTCAAGCTTTGAGTGAGAAAGAAATCGAGCTTGAAAACCTCCTAGAAGATGTTGAGATATACTGGAAACAAAAAGCTCGAGAAGAATGGAT
TCAGTGGGGAGATAGGAACACAATGGTTCTATATGAAAGCCAACAAACGAAGGAAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGATAAATGCAATTTGGTTAAAGTTTATCACCAGGCTCTTATTGCCTCTGACCACAGGCCTTTATTGGCAGAATGGATGGAAGATAAGCTAGGTTTGGTAAAAAA
TCTCCCTCGAAGATTCGAAGAAGTTTGGACTAAATACGGGGAGTGTAAGGACATTGTACACCAAGTTTGGCAGGCCTCGAATCATCAAGTTAACACCACAATTCAAACAA
GGACTAAAGAGTGCCTCAATAGACTAACTATTGGGAGTCATTCCAAATATGGTGGATCGATTAGAGGAGCTATTGCAAGAAAAGAAAAAGAAATCCAGGAACTTTTATCT
CGAAATGATCGTCATAATCTTCAAGCTTTGAGTGAGAAAGAAATCGAGCTTGAAAACCTCCTAGAAGATGTTGAGATATACTGGAAACAAAAAGCTCGAGAAGAATGGAT
TCAGTGGGGAGATAGGAACACAATGGTTCTATATGAAAGCCAACAAACGAAGGAAATCTAA
Protein sequenceShow/hide protein sequence
MQDKCNLVKVYHQALIASDHRPLLAEWMEDKLGLVKNLPRRFEEVWTKYGECKDIVHQVWQASNHQVNTTIQTRTKECLNRLTIGSHSKYGGSIRGAIARKEKEIQELLS
RNDRHNLQALSEKEIELENLLEDVEIYWKQKAREEWIQWGDRNTMVLYESQQTKEI