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Lag0035145 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035145
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:15648331..15651069
RNA-Seq ExpressionLag0035145
SyntenyLag0035145
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN76029.1 hypothetical protein VITISV_016069 [Vitis vinifera]2.1e-1750Show/hide
Query:  AVARGWSDNGWVERVVKRWR----RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENG
        AV  G+SD  W+   V++ R    ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M+NG       R N 
Subjt:  AVARGWSDNGWVERVVKRWR----RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENG

Query:  VNRV
        + ++
Subjt:  VNRV
KAF3615977.1 hypothetical protein FXO37_35266 [Capsicum annuum]5.1e-1663.51Show/hide
Query:  RSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENGVNRV
        RSTMESEFIALDKAGE+ EWLRN  EDI P W  PV PICIHCDSQV I RA ++M+NG       R N V  +
Subjt:  RSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENGVNRV
RVW12910.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.6e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                V  W+  ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
RVW28171.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.6e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                V  W+  ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
RVX02539.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.6e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                   W+  ++    RSTMESEFIALDK GE+VEWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
TrEMBL top hitse value%identityAlignment
A0A438BPX1 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                V  W+  ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
A0A438CYB0 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                V  W+  ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
A0A438GUX5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                V  W+  ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
A0A438J0Q7 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1644.92Show/hide
Query:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM
        AV  G+SD  W+  V                   W+  ++    RSTMESEFIALDK GE+VEWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M
Subjt:  AVARGWSDNGWVERV----------------VKRWR--RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLM

Query:  FNGNPILELNRENGVNRV
        +NG       R N + ++
Subjt:  FNGNPILELNRENGVNRV
A5AT67 Uncharacterized protein9.9e-1850Show/hide
Query:  AVARGWSDNGWVERVVKRWR----RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENG
        AV  G+SD  W+   V++ R    ++    RSTMESEFIALDK GE+ EWLR+  EDI P W+ PV PICIHCDSQ  I RAQ+ M+NG       R N 
Subjt:  AVARGWSDNGWVERVVKRWR----RREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENG

Query:  VNRV
        + ++
Subjt:  VNRV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAAGGGGCAGTGGCGCGAGGATGGAGCGACAACGGTTGGGTGGAACGGGTGGTGAAGAGATGGCGGCGGCGTGAGGGTGCAACAAGGTCCACTATGGAATCCGA
ATTCATAGCCTTGGACAAAGCAGGGGAAAAAGTCGAATGGCTACGTAACTCTTTTGAAGATATTCGACCTAATTGGACTACACCTGTACGCCCAATATGTATACACTGTG
ATAGTCAAGTTGTTATTGAAAGAGCGCAAAACTTGATGTTTAATGGGAATCCTATATTGGAACTAAATCGAGAAAATGGAGTTAACCGGGTGTTCGGGATACAAAAAGAG
GCCGAAGAACTGAAAGGAATCAAGTCAGAGGCTTTTAAAATAGGCACATCCGAGAGTCAGCGTCTCGACGCTGCTCTTTGGACGTCTCGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAAGGGGCAGTGGCGCGAGGATGGAGCGACAACGGTTGGGTGGAACGGGTGGTGAAGAGATGGCGGCGGCGTGAGGGTGCAACAAGGTCCACTATGGAATCCGA
ATTCATAGCCTTGGACAAAGCAGGGGAAAAAGTCGAATGGCTACGTAACTCTTTTGAAGATATTCGACCTAATTGGACTACACCTGTACGCCCAATATGTATACACTGTG
ATAGTCAAGTTGTTATTGAAAGAGCGCAAAACTTGATGTTTAATGGGAATCCTATATTGGAACTAAATCGAGAAAATGGAGTTAACCGGGTGTTCGGGATACAAAAAGAG
GCCGAAGAACTGAAAGGAATCAAGTCAGAGGCTTTTAAAATAGGCACATCCGAGAGTCAGCGTCTCGACGCTGCTCTTTGGACGTCTCGACGCTAG
Protein sequenceShow/hide protein sequence
MVQGAVARGWSDNGWVERVVKRWRRREGATRSTMESEFIALDKAGEKVEWLRNSFEDIRPNWTTPVRPICIHCDSQVVIERAQNLMFNGNPILELNRENGVNRVFGIQKE
AEELKGIKSEAFKIGTSESQRLDAALWTSRR