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Lag0035154 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035154
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr3:15846911..15849246
RNA-Seq ExpressionLag0035154
SyntenyLag0035154
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]2.0e-1563.77Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH
        ++ L KE  I ES+ +V PN+ES VK+LKKQY TIAEMMG  CSGF WN+ERKCIEAEK + + WV+GH
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH

KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.6e-1564.18Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVE
        ++ L KE  IPES+ +V PN+ES+VK+LKKQY  IA+MMG AC+ F WNEERKCIEAEK +FD WV+
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVE

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-1664.29Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP
        ++ L KE  IP S+ +V  N+ES+VK LKKQY  IA+MMG ACS F WNEERKCIEAEK +FD WV+GHP
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]2.0e-1563.77Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH
        ++ L KE  I ES+ +V PN+ES VK+LKKQY TIAEMMG  CSGF WN+ERKCIEAEK + + WV+GH
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]3.1e-1664.29Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP
        ++ L KE  IP S+ +V  N+ES+VK LKKQY  IA+MMG ACS F WNEERKCIEAEK +FD WV+GHP
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like1.5e-1664.29Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP
        ++ L KE  IP S+ +V  N+ES+VK LKKQY  IA+MMG ACS F WNEERKCIEAEK +FD WV+GHP
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein9.7e-1663.77Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH
        ++ L KE  I ES+ +V PN+ES VK+LKKQY TIAEMMG  CSGF WN+ERKCIEAEK + + WV+GH
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH

A0A5A7TF70 Putative nuclease HARBI11.3e-1564.18Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVE
        ++ L KE  IPES+ +V PN+ES+VK+LKKQY  IA+MMG AC+ F WNEERKCIEAEK +FD WV+
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVE

A0A5D3BC95 Retrotransposon protein1.5e-1664.29Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP
        ++ L KE  IP S+ +V  N+ES+VK LKKQY  IA+MMG ACS F WNEERKCIEAEK +FD WV+GHP
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein9.7e-1663.77Show/hide
Query:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH
        ++ L KE  I ES+ +V PN+ES VK+LKKQY TIAEMMG  CSGF WN+ERKCIEAEK + + WV+GH
Subjt:  IRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCTCCTCGTTCAGCAGCATCGCAAACCTTATATACTGCCCAATTTACGCGACAACGTCGAGACGCTAAGGACACAGCGTCTCGACGCTGTGTCAATATTCCAAT
GGGATTGAAATCACGATTCCAACCCATTTCTCATCCTCTTTCTTCCTCATTGATGCATCTGAGTTGTGGTTTCGATGTGTCTCGGTCTCGCTGTTTCCCTTTACTTCTCA
GATCTGGCCCCTCTCCCCTTGCCATTTTGAATCCCCAACCCCTCTCTCTTGTCATCCAGAAGAAGGACCCATCTCCATGTGGCTTCCTCCCATGCGATGATAGTTGCATG
TCGGCTCGAGCTCACATTTTGAGATTCAGATGTTGCACCATCCGTTCACTATTCAAAGAAGCTTGGATTCCAGAATCAGATAGGGAAGTCGACCCAAATATTGAGTCCAA
GGTCAAGCTCCTCAAGAAACAATATATGACAATTGCTGAGATGATGGGACTAGCCTGTAGTGGGTTCAGATGGAATGAGGAGCGTAAATGCATTGAGGCTGAGAAGGAGA
TCTTTGATGCATGGGTCGAGGGCCACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTCTCCTCGTTCAGCAGCATCGCAAACCTTATATACTGCCCAATTTACGCGACAACGTCGAGACGCTAAGGACACAGCGTCTCGACGCTGTGTCAATATTCCAAT
GGGATTGAAATCACGATTCCAACCCATTTCTCATCCTCTTTCTTCCTCATTGATGCATCTGAGTTGTGGTTTCGATGTGTCTCGGTCTCGCTGTTTCCCTTTACTTCTCA
GATCTGGCCCCTCTCCCCTTGCCATTTTGAATCCCCAACCCCTCTCTCTTGTCATCCAGAAGAAGGACCCATCTCCATGTGGCTTCCTCCCATGCGATGATAGTTGCATG
TCGGCTCGAGCTCACATTTTGAGATTCAGATGTTGCACCATCCGTTCACTATTCAAAGAAGCTTGGATTCCAGAATCAGATAGGGAAGTCGACCCAAATATTGAGTCCAA
GGTCAAGCTCCTCAAGAAACAATATATGACAATTGCTGAGATGATGGGACTAGCCTGTAGTGGGTTCAGATGGAATGAGGAGCGTAAATGCATTGAGGCTGAGAAGGAGA
TCTTTGATGCATGGGTCGAGGGCCACCCATAG
Protein sequenceShow/hide protein sequence
MDSPRSAASQTLYTAQFTRQRRDAKDTASRRCVNIPMGLKSRFQPISHPLSSSLMHLSCGFDVSRSRCFPLLLRSGPSPLAILNPQPLSLVIQKKDPSPCGFLPCDDSCM
SARAHILRFRCCTIRSLFKEAWIPESDREVDPNIESKVKLLKKQYMTIAEMMGLACSGFRWNEERKCIEAEKEIFDAWVEGHP