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Lag0035161 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035161
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:15964798..15968065
RNA-Seq ExpressionLag0035161
SyntenyLag0035161
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042379.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-3254.09Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GDCR  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA  A+D                   
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE  A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

KAA0045217.1 uncharacterized protein E6C27_scaffold30G002260 [Cucumis melo var. makuwa]1.2e-3152.83Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA   +D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE++A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

KAA0047432.1 uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]8.8e-3252.2Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R +Q   GNSWRG   QN  N RPLSCFICKG H    C  + A  AFQA   +D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE++A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-3253.46Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA  A+D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE +A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.9e-3456.17Show/hide
Query:  QTPSSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATD-------------PE-
        Q  SS  +R  R  SPK+GG DK G GD RPFQQRGGN+WRGP   NN N+   SCFICKG H V  C  +AAL+AFQA    D             PE 
Subjt:  QTPSSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATD-------------PE-

Query:  --------AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
                A KFLS LQKK  E KE LERGL YV+AW N K+AKSTMVD GATHNFMTE +A
Subjt:  --------AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

TrEMBL top hitse value%identityAlignment
A0A5A7TTJ4 Reverse transcriptase domain-containing protein5.6e-3252.83Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA   +D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE++A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

A0A5A7TVD8 Reverse transcriptase domain-containing protein4.3e-3252.2Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R +Q   GNSWRG   QN  N RPLSCFICKG H    C  + A  AFQA   +D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE++A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

A0A5D3C9P8 Reverse transcriptase3.3e-3253.46Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GD R  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA  A+D +                 
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE +A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

A0A5D3CW71 Reverse transcriptase5.0e-3354.09Show/hide
Query:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------
        SSG +RNNRP SPK+ GGD++  GDCR  Q   GNSWRGP  QN  N RPLSCFICKG H    C  + A  AFQA  A+D                   
Subjt:  SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPE-----------------

Query:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
             A KFLS+LQKKVGET   +ERGL YVD W N K  KSTMVD GATHNF+TE  A
Subjt:  -----AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

A0A6J1DLQ6 uncharacterized protein LOC1110223209.2e-3556.17Show/hide
Query:  QTPSSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATD-------------PE-
        Q  SS  +R  R  SPK+GG DK G GD RPFQQRGGN+WRGP   NN N+   SCFICKG H V  C  +AAL+AFQA    D             PE 
Subjt:  QTPSSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATD-------------PE-

Query:  --------AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA
                A KFLS LQKK  E KE LERGL YV+AW N K+AKSTMVD GATHNFMTE +A
Subjt:  --------AAKFLSTLQKKVGETKELLERGLTYVDAWENHKSAKSTMVDLGATHNFMTEIDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGATTAACAGAAAATATGGGGCAAAGTTTGTAAGAGACCATTTTTGCTACAAAAATGGAATGGCCTTCATAGTCCATGGAAGGACATTGCAAAGACAAGCAGT
TTCTTTCGGCAGAAGTTCACGGCGTCCAATTGGAGTGCCCAACACAAGTTGTTCTGTAACTATTCCTCATCACCAACTTAAATGGAAGAGCTTTTATGCAGCCCTCCCTT
TGGAGAAGGGTCATCTTGTCACAATGTCCATCAGGCTGTGTGTTGCCTATGGCCACATGTCCTTGACAACACCTCACCCTCATGCTTTCATGCTGCTGAATCAAACTCCC
TCTAGTGGGGCAAACAGAAACAATCGTCCAGACTCACCCAAAAGTGGAGGAGGAGACAAGCAAGGAAGGGGAGATTGTAGACCCTTCCAGCAGAGAGGTGGAAATTCATG
GCGAGGGCCATACCGACAAAACAACTACAACCAAAGGCCCCTTTCGTGCTTCATATGTAAGGGGGCCCATCATGTGTCCGTTTGCCAAAAACAGGCGGCCCTCCAAGCTT
TCCAAGCCATATTTGCCACCGACCCCGAAGCTGCAAAGTTCCTTTCTACTCTCCAGAAGAAAGTGGGGGAGACCAAAGAACTGTTAGAAAGAGGGCTCACGTACGTTGAT
GCATGGGAGAATCACAAGTCGGCCAAGAGCACTATGGTTGACTTAGGAGCCACCCACAACTTCATGACAGAGATTGATGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGATTAACAGAAAATATGGGGCAAAGTTTGTAAGAGACCATTTTTGCTACAAAAATGGAATGGCCTTCATAGTCCATGGAAGGACATTGCAAAGACAAGCAGT
TTCTTTCGGCAGAAGTTCACGGCGTCCAATTGGAGTGCCCAACACAAGTTGTTCTGTAACTATTCCTCATCACCAACTTAAATGGAAGAGCTTTTATGCAGCCCTCCCTT
TGGAGAAGGGTCATCTTGTCACAATGTCCATCAGGCTGTGTGTTGCCTATGGCCACATGTCCTTGACAACACCTCACCCTCATGCTTTCATGCTGCTGAATCAAACTCCC
TCTAGTGGGGCAAACAGAAACAATCGTCCAGACTCACCCAAAAGTGGAGGAGGAGACAAGCAAGGAAGGGGAGATTGTAGACCCTTCCAGCAGAGAGGTGGAAATTCATG
GCGAGGGCCATACCGACAAAACAACTACAACCAAAGGCCCCTTTCGTGCTTCATATGTAAGGGGGCCCATCATGTGTCCGTTTGCCAAAAACAGGCGGCCCTCCAAGCTT
TCCAAGCCATATTTGCCACCGACCCCGAAGCTGCAAAGTTCCTTTCTACTCTCCAGAAGAAAGTGGGGGAGACCAAAGAACTGTTAGAAAGAGGGCTCACGTACGTTGAT
GCATGGGAGAATCACAAGTCGGCCAAGAGCACTATGGTTGACTTAGGAGCCACCCACAACTTCATGACAGAGATTGATGCGTGA
Protein sequenceShow/hide protein sequence
MVVINRKYGAKFVRDHFCYKNGMAFIVHGRTLQRQAVSFGRSSRRPIGVPNTSCSVTIPHHQLKWKSFYAALPLEKGHLVTMSIRLCVAYGHMSLTTPHPHAFMLLNQTP
SSGANRNNRPDSPKSGGGDKQGRGDCRPFQQRGGNSWRGPYRQNNYNQRPLSCFICKGAHHVSVCQKQAALQAFQAIFATDPEAAKFLSTLQKKVGETKELLERGLTYVD
AWENHKSAKSTMVDLGATHNFMTEIDA