; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035181 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035181
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:16244662..16247174
RNA-Seq ExpressionLag0035181
SyntenyLag0035181
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4364303.1 hypothetical protein G4B88_028423 [Cannabis sativa]3.6e-1424.4Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------
        +GY +A     + Q SSS+      WW S+W+L +P K++ F +RL+ + LPT +NL  R           +  F SV+  LF    ++           
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------

Query:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------
                                                       Q  +   ++ W PP +  LKLNTDAA+     + GG                 
Subjt:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------

Query:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
                  AEG A+L  ++  ++ G +  HVEVD + L+  L     +++  G + N IR LL   P+  +  T R GN AAH LA ++
Subjt:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

KAF4386115.1 hypothetical protein F8388_016367 [Cannabis sativa]6.1e-1424.4Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------
        +GY +A     + Q SSS+      WW S+W+L +P K++ F +RL+ + LPT +NL  R           +  F SV+  LF    ++           
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------

Query:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------
                                                       Q  +   ++ W PP +  LKLNTDAA+     + GG                 
Subjt:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------

Query:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
                  AEG A+L  ++  ++ G +  HVEVD + L+  L     +++  G + N IR LL   P+  +  T R GN AAH LA ++
Subjt:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

KAF4395712.1 hypothetical protein G4B88_013486 [Cannabis sativa]6.1e-1424.4Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------
        +GY +A     + Q SSS+      WW S+W+L +P K++ F +RL+ + LPT +NL  R           +  F SV+  LF    ++           
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------

Query:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------
                                                       Q  +   ++ W PP +  LKLNTDAA+     + GG                 
Subjt:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------

Query:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
                  AEG A+L  ++  ++ G +  HVEVD + L+  L     +++  G + N IR LL   P+  +  T R GN AAH LA ++
Subjt:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

KAF4402566.1 hypothetical protein G4B88_012351 [Cannabis sativa]1.4e-1525.83Show/hide
Query:  GYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQA------FQFASVKDGLFSSSGLR------------
        GY +A      +Q SSS++     WW S+W L +P K++ F +RL+ N +PT +NL  R              + SV+  LF    ++            
Subjt:  GYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQA------FQFASVKDGLFSSSGLR------------

Query:  ---------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG---------------------------AEGLAMLRGI
                                   Q  T  +++AW PP +  LKLNTDAAV     +  G                           AEG  +L G+
Subjt:  ---------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG---------------------------AEGLAMLRGI

Query:  QIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
        +  R+ G +  H+EVD + L+  L     ++S  G + N IR +L    +  +  T R GN  AH LA ++
Subjt:  QIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

XP_037480834.1 uncharacterized protein LOC119358354 [Triticum dicoccoides]7.2e-1528.63Show/hide
Query:  SSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQAFQFASVKDGLFSSSGLRQGPTSASVIAWSPPALNELKLNTDAAVRPESG
        SSS+  V Q  W ++W++  P K+K+  WR++HN LPT D L KR++  +             S+G  +     S+  WSPP    +K+N DA +  ++ 
Subjt:  SSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQAFQFASVKDGLFSSSGLRQGPTSASVIAWSPPALNELKLNTDAAVRPESG

Query:  QVG---------------------------GAEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRL
        ++G                             E +AM   +  A + GF    VE D   L+  +   + D S  GAV  +I+S   +  SC      R 
Subjt:  QVG---------------------------GAEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRL

Query:  GNLAAHTLASLAFH----CHFEFSSYV
         N AAH LA  A H    C F  S  V
Subjt:  GNLAAHTLASLAFH----CHFEFSSYV

TrEMBL top hitse value%identityAlignment
A0A2N9IYL5 RNase H domain-containing protein7.0e-1629.92Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFS-----------SSGLR
        SGY+       +    SSD T     W S+W LNVP K++ F WR  HN LPTK NL  R +         ++Q  S    L+            S G +
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFS-----------SSGLR

Query:  QGPTSASVIAWSPPALNELKLNTDAA-------------VRPESGQVGGA--------------EGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNED
          P S  ++ W+PPA    K+N D A             VR   G+V G+              E  A    IQ A+++GF+ F +E DS+ +V  L   
Subjt:  QGPTSASVIAWSPPALNELKLNTDAA-------------VRPESGQVGGA--------------EGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNED

Query:  VGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
            +  G + ++I+ + +   S   L T R GN+ AH LA  A
Subjt:  VGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

A0A5C7HVU6 CCHC-type domain-containing protein2.9e-1428.25Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYL-----------------------------------Q
        SGY++A GLK ++ +SS  L+    WW  +WK NVP+K K+FFW+  H  LPT   L +R V +                                    
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYL-----------------------------------Q

Query:  AFQFASVKDGLFSSSGLRQGPTSASVIA----WSPPALNELKLNTDAAVRPESGQVGGA---------------------------EGLAMLRGIQIARE
        A    +  D   S   +   P    +++    W PP L E K+N DA+ R  SG  G                             E  A L G+Q+A +
Subjt:  AFQFASVKDGLFSSSGLRQGPTSASVIA----WSPPALNELKLNTDAAVRPESGQVGGA---------------------------EGLAMLRGIQIARE

Query:  VGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTP---RLGNLAAHTLASLA
        VG S   +E D++ +VR+L++ +   +E+G +   I   L  G S R+L      R  N  AH LA LA
Subjt:  VGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTP---RLGNLAAHTLASLA

A0A7J6F0S9 Uncharacterized protein1.7e-1424.4Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------
        +GY +A     + Q SSS+      WW S+W+L +P K++ F +RL+ + LPT +NL  R           +  F SV+  LF    ++           
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------

Query:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------
                                                       Q  +   ++ W PP +  LKLNTDAA+     + GG                 
Subjt:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------

Query:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
                  AEG A+L  ++  ++ G +  HVEVD + L+  L     +++  G + N IR LL   P+  +  T R GN AAH LA ++
Subjt:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

A0A7J6I5F8 Uncharacterized protein7.0e-1625.83Show/hide
Query:  GYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQA------FQFASVKDGLFSSSGLR------------
        GY +A      +Q SSS++     WW S+W L +P K++ F +RL+ N +PT +NL  R              + SV+  LF    ++            
Subjt:  GYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQA------FQFASVKDGLFSSSGLR------------

Query:  ---------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG---------------------------AEGLAMLRGI
                                   Q  T  +++AW PP +  LKLNTDAAV     +  G                           AEG  +L G+
Subjt:  ---------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG---------------------------AEGLAMLRGI

Query:  QIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
        +  R+ G +  H+EVD + L+  L     ++S  G + N IR +L    +  +  T R GN  AH LA ++
Subjt:  QIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

A0A803PBD1 Uncharacterized protein1.0e-1424.74Show/hide
Query:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------
        +GY +A     ++Q SSS+      WW S+W L +P K++ F +RL+ + LPT +NL  R           +  F SV+  LF    ++           
Subjt:  SGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQ------AFQFASVKDGLFSSSGLR-----------

Query:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------
                                                       Q  +   ++ W PP +  LKLNTDAAV     + GG                 
Subjt:  -----------------------------------------------QGPTSASVIAWSPPALNELKLNTDAAVRPESGQVGG-----------------

Query:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA
                  AEG A+L  ++   + G +  HVEVD + L+  L     +++  G + N IR LL   P+  +  T R GN AAH LA ++
Subjt:  ----------AEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGAAAATTCGAGCGCACTTCATCATTTCGGACAAGTGGATACAGGTTAGCTCATGGCCTAAAAGTCCAGAGTCAGGCATCTTCTTCGGATTTGACGGTGTGGCA
GGTGTGGTGGTCTAGTATTTGGAAGTTGAACGTCCCGAGTAAAGTTAAGGTCTTCTTTTGGAGACTTTCGCACAATCGCTTGCCTACGAAGGACAATCTTCTCAAAAGAG
CAGTTTATCTCCAGGCTTTTCAGTTCGCATCTGTGAAGGATGGACTTTTTTCTTCGTCCGGTTTGCGGCAGGGCCCGACGTCAGCTTCTGTCATCGCGTGGAGTCCACCA
GCGCTAAATGAGCTCAAGCTCAATACTGATGCGGCAGTGAGGCCCGAGTCTGGGCAGGTGGGTGGAGCTGAAGGACTGGCCATGTTGAGGGGCATCCAAATTGCTCGGGA
GGTGGGTTTCTCTAGCTTCCATGTCGAGGTCGATTCTCAGAGATTAGTCAGAATTTTGAATGAGGATGTGGGCGATGTTTCGGAGGTTGGTGCAGTTGCAAATGAGATTC
GTTCTTTGCTCCGACAAGGTCCTTCCTGTAGGGTGTTGTTTACGCCCAGATTAGGCAATCTGGCAGCTCATACTTTAGCCTCTTTAGCTTTTCATTGTCACTTCGAGTTC
TCTAGCTACGTTCAACCTCATCGAGCACTCCAATCAAAAGAAGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGAAAATTCGAGCGCACTTCATCATTTCGGACAAGTGGATACAGGTTAGCTCATGGCCTAAAAGTCCAGAGTCAGGCATCTTCTTCGGATTTGACGGTGTGGCA
GGTGTGGTGGTCTAGTATTTGGAAGTTGAACGTCCCGAGTAAAGTTAAGGTCTTCTTTTGGAGACTTTCGCACAATCGCTTGCCTACGAAGGACAATCTTCTCAAAAGAG
CAGTTTATCTCCAGGCTTTTCAGTTCGCATCTGTGAAGGATGGACTTTTTTCTTCGTCCGGTTTGCGGCAGGGCCCGACGTCAGCTTCTGTCATCGCGTGGAGTCCACCA
GCGCTAAATGAGCTCAAGCTCAATACTGATGCGGCAGTGAGGCCCGAGTCTGGGCAGGTGGGTGGAGCTGAAGGACTGGCCATGTTGAGGGGCATCCAAATTGCTCGGGA
GGTGGGTTTCTCTAGCTTCCATGTCGAGGTCGATTCTCAGAGATTAGTCAGAATTTTGAATGAGGATGTGGGCGATGTTTCGGAGGTTGGTGCAGTTGCAAATGAGATTC
GTTCTTTGCTCCGACAAGGTCCTTCCTGTAGGGTGTTGTTTACGCCCAGATTAGGCAATCTGGCAGCTCATACTTTAGCCTCTTTAGCTTTTCATTGTCACTTCGAGTTC
TCTAGCTACGTTCAACCTCATCGAGCACTCCAATCAAAAGAAGAAGAGTGA
Protein sequenceShow/hide protein sequence
MRRKFERTSSFRTSGYRLAHGLKVQSQASSSDLTVWQVWWSSIWKLNVPSKVKVFFWRLSHNRLPTKDNLLKRAVYLQAFQFASVKDGLFSSSGLRQGPTSASVIAWSPP
ALNELKLNTDAAVRPESGQVGGAEGLAMLRGIQIAREVGFSSFHVEVDSQRLVRILNEDVGDVSEVGAVANEIRSLLRQGPSCRVLFTPRLGNLAAHTLASLAFHCHFEF
SSYVQPHRALQSKEEE