CuGenDBv2

Gene ID	Lag0035233
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr3:17183518..17186700
RNA-Seq Expression	Lag0035233
Synteny	Lag0035233
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0043167 - ion binding (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TKR74765.1 hypothetical protein D5086_0000292320 [Populus alba]

1.3e-47

49.09

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M++E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ASV  ++N   T+ NQL SV IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

TKR89927.1 hypothetical protein D5086_0000238200 [Populus alba]

6.4e-47

48.64

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

TKR90717.1 hypothetical protein D5086_0000230290 [Populus alba]

2.6e-48

49.55

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG NFGYWKMQ++DYL  KK+H   L  +P+ M++E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ASV  ++N   T+ NQL SV IEF+DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

TKS02608.1 hypothetical protein D5086_0000161380 [Populus alba]

6.4e-47

48.64

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

TKS09800.1 hypothetical protein D5086_0000089010 [Populus alba]

6.4e-47

48.64

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

TrEMBL top hits

e value

%identity

Alignment

A0A4U5P1P0 CCHC-type domain-containing protein

3.1e-47

48.64

Show/hide

Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

A0A4U5P397 CCHC-type domain-containing protein

1.3e-48

49.55

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG NFGYWKMQ++DYL  KK+H   L  +P+ M++E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ASV  ++N   T+ NQL SV IEF+DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

A0A4U5PY83 CCHC-type domain-containing protein

3.1e-47

48.64

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

A0A4U5QGR0 Uncharacterized protein

3.1e-47

48.64

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M+ E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

A0A4V6XW18 CCHC-type domain-containing protein

6.2e-48

49.09

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Query:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN
        G+ KFDG +FGYWKMQ++DYL  KK+H   L  +P+ M++E+W+ LD + +  IR+ LS  V   V  E +  KLME+L+  YEKPSANNKV+L+KK FN
Subjt:  GVMKFDGKNFGYWKMQVKDYLTCKKVH-KALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFN

Query:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD
        ++M E+ASV  ++N   T+ NQL SV IEF DE+ A+ LL SLP SWE M+TAVSNS G + LK+ ++ DL +AEE+RR+ S +  + GSAL + T+G+ 
Subjt:  MQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSAL-VMTKGKD

Query:  KVDEDNEPSSSRKKWKYRNE
            D   S  R K +YR++
Subjt:  KVDEDNEPSSSRKKWKYRNE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-19

32.43

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Query:  VMKFDGKN-FGYWKMQVKDYLTCKKVHKAL---KERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKF
        V KF+G N F  W+ +++D L  + +HK L    ++P  MK EDW  LDE A + IR+ LS DV + +  E TA  +   L + Y   +  NK+YL K+ 
Subjt:  VMKFDGKN-FGYWKMQVKDYLTCKKVHKAL---KERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKF

Query:  FNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSNKEPTVGSALVMT-K
        + + MSE  +  S++N    LI QL ++ ++  +E  AI LL SLP S++ + T + +  G  T++  +V   L + E++R++  N+    G AL+   +
Subjt:  FNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSNKEPTVGSALVMT-K

Query:  GKDKVDEDNEPSSSRKKWKYRN
        G+      N    S  + K +N
Subjt:  GKDKVDEDNEPSSSRKKWKYRN

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

1.1e-09

35.23

Show/hide

Query:  KFDGKNFGYWKMQVKDYLTCKKVHKALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKV
        K DG ++ + +M+++DYL  KK+H+ L ++ + M  +DW  L  + +  IR+ +S ++   VA E +   LM+ L++ Y+KPS NN V
Subjt:  KFDGKNFGYWKMQVKDYLTCKKVHKALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGACACAGCCTGGGTTTGATGATCGAAACAGAGGAGGCTTAGGATGGGTGGTGCGTGACTCAAATGGGTCCTTAATCAACCTCGGCAAGAAACAAATCAATCGAAG
ATGGGAAGTCAAAGTTCTGGAATCGAAATATATTTTAGAGGGGATGAAAGTAATTTTCAATACCTGTCGTGAGAATAATATCCCCCTCGAAATCGAAACTGATGCCTTAT
CAGTTGTGAAATCGCTGAGAGGAGAATCGGAGGATATTTCGGAGATGAAACCGATCATTGATGAAATTCCATTGCTCACAGTGCTGCAAGAGAGGCATTGTCTTCTTCTT
TTTGTTGCAATCAGAGATCCACAAACTCTTTTCCTTTTCCTTGTTTCTTCTTCTCCCGCTTATGATCCCAATTCCATGGCACATCCTCCAAACACCGGAGCTGCAATGGC
GGCGGCAATGGCGGTCCTGATTTTGACAAGAGCAAATTGTTTTGTGGCGGCTGAATGCAGTGACCGTGAGGGTGGTCTTTTGGCTGAAGCTCTCTATGCGGCAGTGAGAG
CTTTTGGTTCAGGAGTCATGGGTTTTGTAGAGCCAAAAAGTTTCGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAAGATTACTTA
ACTTGCAAGAAAGTGCATAAGGCATTAAAGGAGAGACCGAAAGATATGAAGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACAATTAGGATGTGTTTGTC
GATGGATGTGACAAGTCTTGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAATCGCTTACAAACAGGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTA
AGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAATTTTCTGAT
GAGGTGAATGCTATTCAGTTATTAACGTCTTTACCTGATAGTTGGGAAACTATGAAGACAGCAGTGTCTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTG
TGATTTAGCCATAGCTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGCCTACTGTAGGGTCAGCTTTGGTTATGACTAAGGGCAAAGATAAAGTTGATGAAGATAATG
AACCGAGTAGCAGTAGGAAAAAGTGGAAATATAGGAATGAGCGGATTCCTCCCGGAACTCCGGATCTTTTGGGATATGTTTCAAACCCAATGAAGAGCGACCGATCAAGC
ACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQTQPGFDDRNRGGLGWVVRDSNGSLINLGKKQINRRWEVKVLESKYILEGMKVIFNTCRENNIPLEIETDALSVVKSLRGESEDISEMKPIIDEIPLLTVLQERHCLLL
FVAIRDPQTLFLFLVSSSPAYDPNSMAHPPNTGAAMAAAMAVLILTRANCFVAAECSDREGGLLAEALYAAVRAFGSGVMGFVEPKSFDGVMKFDGKNFGYWKMQVKDYL
TCKKVHKALKERPKDMKDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSD
EVNAIQLLTSLPDSWETMKTAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKEPTVGSALVMTKGKDKVDEDNEPSSSRKKWKYRNERIPPGTPDLLGYVSNPMKSDRSS
TRQLAIPSSVTGVHQYTMIVVWIIATHSLNHP

Lag0035233 (gene) of Sponge gourd (AG-4) v1 genome