CuGenDBv2

Gene ID	Lag0035261
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr3:17654758..17655123
RNA-Seq Expression	Lag0035261
Synteny	Lag0035261
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

4.9e-36

71.55

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Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

KAA0056219.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-36

70.69

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Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+RDHKPRSKL+L EA + STRVVDE GPS+R V E+++  QS P   +  LRRSGRVV+QP+ YLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-36

71.55

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Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

TYK04057.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-36

70.69

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+RDHKPRSKL+L EA + STRVVDE GPS+R V E+++  QS P   +  LRRSGRVV+QP+ YLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]

4.9e-36

71.55

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZD0 Gag/pol protein

2.4e-36

71.55

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

A0A5A7URU4 Gag/pol protein

1.4e-36

70.69

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+RDHKPRSKL+L EA + STRVVDE GPS+R V E+++  QS P   +  LRRSGRVV+QP+ YLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

A0A5A7USZ2 Gag/pol protein

1.8e-36

71.55

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

A0A5D3BUN8 Gag/pol protein

2.4e-36

71.55

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Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+R+HKPRSKLVL EAT+ STRVVDE GPS+R V E+++  QS P   +   RRSGRVV+QP+RYLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

A0A5D3BX24 Gag/pol protein

1.4e-36

70.69

Show/hide

Query:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE
        DP +N+VFVSTNATFLEEDH+RDHKPRSKL+L EA + STRVVDE GPS+R V E+++  QS P   +  LRRSGRVV+QP+ YLGL ETQVVI DDGVE
Subjt:  DPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVE

Query:  DPFSYRQAMNDIDKDE
        DP SY+QAMND+DKD+
Subjt:  DPFSYRQAMNDIDKDE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATCTTTTCTAACGACCCTCTAGATAATAAAGTATTTGTATCGACAAACGCAACTTTCTTGGAGGAAGACCACATTCGAGATCATAAACCACGAAGTAAGTTAGTATT
AGGAGAAGCTACAGAAGGATCAACAAGGGTTGTTGATGAACCTGGTCCTTCAACAAGAGTTGTTGGAGAATCTAGTTCTTATCGTCAATCTAGTCCTCCTCTCGTAGTGG
GAGAGCTTCGACGCAGTGGGAGGGTTGTGACACAACCTGACCGCTACTTGGGTTTAATGGAAACACAAGTAGTCATACTTGATGACGGCGTAGAAGATCCATTTTCTTAT
CGACAGGCAATGAATGACATAGATAAAGACGAGTAG

mRNA sequence

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Protein sequence

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MIFSNDPLDNKVFVSTNATFLEEDHIRDHKPRSKLVLGEATEGSTRVVDEPGPSTRVVGESSSYRQSSPPLVVGELRRSGRVVTQPDRYLGLMETQVVILDDGVEDPFSY
RQAMNDIDKDE

Lag0035261 (gene) of Sponge gourd (AG-4) v1 genome