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Lag0035263 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035263
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr3:17669877..17671686
RNA-Seq ExpressionLag0035263
SyntenyLag0035263
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030936440.1 uncharacterized protein LOC115961637 [Quercus lobata]5.7e-1932.99Show/hide
Query:  AEQKLNRKKAHESSPLKTAPDERLLNSISKSSPWPKAEADQRPRS-HRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCM
        A+  +  KK   S  + T P             W +   D+  +    +VRNQ+     YTPL AS  QV   I+D   LK PEK++ DP+++N+NKYC 
Subjt:  AEQKLNRKKAHESSPLKTAPDERLLNSISKSSPWPKAEADQRPRS-HRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCM

Query:  FHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSA
        FH DHGH T EC  L+ +IE LIR+G  +GF+G D+          +     L EI+ I+GGSS        +   S++ Y   + ++    ++  A
Subjt:  FHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSA

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]5.2e-2037.04Show/hide
Query:  KAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK
        K   D+R            R  +YTPL A   QVL  I+D   LK PEKL+ DP+++N+NKYC FH DHGH T EC  L+ +IE LIR+G  +GF+G D+
Subjt:  KAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK

Query:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL
                        L EI+ I+GGSS       G    S++ Y   + N+    ++  A+
Subjt:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]5.2e-2036.17Show/hide
Query:  KAHESSPLKTAPDERLLNSISKSSPWPKAEADQRPRSHRAVRNQE---------ARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCM
        K +E  P   A  +R      ++ P   +E   RP+  R    +E          R   YTPL A   QVL  I+D   LK PEK++ DP+++NKNKYC 
Subjt:  KAHESSPLKTAPDERLLNSISKSSPWPKAEADQRPRSHRAVRNQE---------ARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCM

Query:  FHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
        FH DHGH T EC  L+ +IE LIR+G  K FVG D++   L     +     L EI+ I+GG+        G+   S++ Y  A+ N+
Subjt:  FHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030970011.1 uncharacterized protein LOC115990308 [Quercus lobata]4.4e-1935.98Show/hide
Query:  AEQKLNRKKAHESSPLKTAPDERLLNSISKSSPWPK--AEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYC
        AE  +  KK+  +  ++  P        S+  P PK     D++ R +R       R   YTPL A   QVL  I+D   LK PEK++ DP+++NK+KYC
Subjt:  AEQKLNRKKAHESSPLKTAPDERLLNSISKSSPWPK--AEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYC

Query:  MFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
         FH DHGH T EC  L+ +IE LIR+G  + FVG D     L     +    LL EI+ I+GG+S       G+   S++ Y   + N+
Subjt:  MFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]2.6e-1936.42Show/hide
Query:  KAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK
        K   D+R            R  +YTPL A   QVL  I+D   LK PEKL+ DP+++N+NKYC FH DHGH T EC  L+ +IE LIR+G  +GF+G D+
Subjt:  KAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK

Query:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL
                        L EI+ I+GGS        G    S++ Y   + N+    ++  A+
Subjt:  SKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSAL

TrEMBL top hitse value%identityAlignment
A0A2N9G875 Ribonuclease H2.1e-1936.49Show/hide
Query:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP
        M EA++ +N + A E      S   K   D RL +S +KSS   +PK E      S+R    +E R   +TPL  S  QVL  IQD   ++ P KLRSDP
Subjt:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP

Query:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC
        ++++KN YC FH DHGH T +C  L+ +IEALIR+G    FV  DK       RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ 
Subjt:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC

Query:  YFMALGNIDRK
        + + +    RK
Subjt:  YFMALGNIDRK

A0A2N9H9Y5 Ribonuclease H2.1e-1936.49Show/hide
Query:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP
        M EA++ +N + A E      S   K   D RL +S +KSS   +PK E      S+R    +E R   +TPL  S  QVL  IQD   ++ P KLRSDP
Subjt:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP

Query:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC
        ++++KN YC FH DHGH T +C  L+ +IEALIR+G    FV  DK       RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ 
Subjt:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC

Query:  YFMALGNIDRK
        + + +    RK
Subjt:  YFMALGNIDRK

A0A2N9HDB7 Ribonuclease H3.6e-1936.02Show/hide
Query:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP
        M EA++ +N + A E      S   K   D R  +S +KSS   +PK E      S+R    +E R   +TPL  S  QVL  IQD   ++ P KLRSDP
Subjt:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP

Query:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC
        ++++KN YC FH DHGH T +C  L+ +IEALIR+G    FV  DK       RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ 
Subjt:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK-----SKRPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC

Query:  YFMALGNIDRK
        + + +    RK
Subjt:  YFMALGNIDRK

A0A2N9HFP5 Reverse transcriptase4.7e-1935.85Show/hide
Query:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP
        M EA++ +N + A +      S   K   D R  +S +KSS   +PKAE      S+R    +E R   +TPL  S  QVL  IQD+  +K P KLRSDP
Subjt:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP

Query:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC
         +++K+ YC FH DHGH T +C  L+ +IEALIR+G    FV  DK +     RP   D+ K        +++ EI+TI+GG +  G +    +  +R+ 
Subjt:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC

Query:  YFMALGNIDRKA
        + + +    RK+
Subjt:  YFMALGNIDRKA

A0A2N9I6U4 Reverse transcriptase2.1e-1936.61Show/hide
Query:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP
        M EA++ +N + A +      S   K   D R  +S +KSS   +PKAE      S+R    +E R   +TPL  S  QVL  I+D   +K P KLRSDP
Subjt:  MAEAEQKLNRKKAHE------SSPLKTAPDERLLNSISKSS--PWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDP

Query:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC
         +++K+ YC FH DHGH T +C  L+ +IEALIR+G    FV  DK++     RP   D+ K        +++ EI+TI+GG      A+ G  + SR+ 
Subjt:  DRKNKNKYCMFHGDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-----RPLPADQGKG-----GANLLFEIQTILGGSSEEGGAAHGEQKMSREC

Query:  YFMALGNIDRKAQATSALGDGRGR
        Y     NI    ++  +  DGR R
Subjt:  YFMALGNIDRKAQATSALGDGRGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGGCCGAGCAGAAGCTCAATCGCAAAAAGGCCCACGAAAGTTCACCGCTAAAGACAGCGCCAGATGAAAGACTGCTCAACTCGATCAGCAAGAGCAGTCCTTG
GCCAAAGGCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCAAGAAGCCAGATTCGACAGGTATACACCGCTAACAGCTTCCTTTGCACAGGTCTTGG
CCGCAATACAGGACACAAATTTGTTGAAACGCCCAGAAAAGTTGAGATCAGACCCCGATAGGAAGAACAAAAACAAATACTGCATGTTCCACGGAGACCACGGTCATGCA
ACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGTTACCCCAAGGGGTTCGTTGGGAATGACAAAAGCAAGAGGCCACTGCCGGCAGATCA
AGGTAAGGGCGGTGCCAACCTGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACT
TTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGGCCGAGCCTTTGAGGGCGCTTGCAGAGAGACTCGGGAGATTCCCAGG
CCTCCCAAAGCTTTTCCCCAGAGGAGTGTACGCACCCCTGGGAAGACCACAACACTTGACCTGTTATCAGGAGTTGGTCGGCCTCATGCCAAGGCTGAGGCCGACCACCT
AGAGGCTAAGGCCAAACACCACCTTCAAGAGCTCGGTCACGAAAAGAGTGTACGCACCCCTGGGATGACTAGGCAGCTTGAAGAGAGGCTTGGGGAATTCCTAGGCATCC
CCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCCCAGACCTCCCCAAGCTTTTTCCCCAGAAGAGTGTA
CGCACCCCTGGGATGGCCACGACGCTTGAAGAGAGGCCCTGGAAAATTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACGACGATGC
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGGCCGAGCAGAAGCTCAATCGCAAAAAGGCCCACGAAAGTTCACCGCTAAAGACAGCGCCAGATGAAAGACTGCTCAACTCGATCAGCAAGAGCAGTCCTTG
GCCAAAGGCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCAAGAAGCCAGATTCGACAGGTATACACCGCTAACAGCTTCCTTTGCACAGGTCTTGG
CCGCAATACAGGACACAAATTTGTTGAAACGCCCAGAAAAGTTGAGATCAGACCCCGATAGGAAGAACAAAAACAAATACTGCATGTTCCACGGAGACCACGGTCATGCA
ACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGTTACCCCAAGGGGTTCGTTGGGAATGACAAAAGCAAGAGGCCACTGCCGGCAGATCA
AGGTAAGGGCGGTGCCAACCTGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACT
TTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGGCCGAGCCTTTGAGGGCGCTTGCAGAGAGACTCGGGAGATTCCCAGG
CCTCCCAAAGCTTTTCCCCAGAGGAGTGTACGCACCCCTGGGAAGACCACAACACTTGACCTGTTATCAGGAGTTGGTCGGCCTCATGCCAAGGCTGAGGCCGACCACCT
AGAGGCTAAGGCCAAACACCACCTTCAAGAGCTCGGTCACGAAAAGAGTGTACGCACCCCTGGGATGACTAGGCAGCTTGAAGAGAGGCTTGGGGAATTCCTAGGCATCC
CCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCCCAGACCTCCCCAAGCTTTTTCCCCAGAAGAGTGTA
CGCACCCCTGGGATGGCCACGACGCTTGAAGAGAGGCCCTGGAAAATTCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACGACGATGC
TTGA
Protein sequenceShow/hide protein sequence
MAEAEQKLNRKKAHESSPLKTAPDERLLNSISKSSPWPKAEADQRPRSHRAVRNQEARFDRYTPLTASFAQVLAAIQDTNLLKRPEKLRSDPDRKNKNKYCMFHGDHGHA
TRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANLLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSALGDGRGRAFEGACRETREIPR
PPKAFPQRSVRTPGKTTTLDLLSGVGRPHAKAEADHLEAKAKHHLQELGHEKSVRTPGMTRQLEERLGEFLGIPKLFPQKSVRTPGMTTMLEERLGNFPDLPKLFPQKSV
RTPGMATTLEERPWKIPRPPQAFSPEECTHPWDDDDA