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Lag0035339 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035339
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:19677615..19680640
RNA-Seq ExpressionLag0035339
SyntenyLag0035339
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042464.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-0465.31Show/hide
Query:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
        AKEAVWL+KFLTDLEVVPNM L + YTVT VV +    NL   NE +TL
Subjt:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
TYK22912.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-0465.31Show/hide
Query:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
        AKEAVWL+KFLTDLEVVPNM L + YTVT VV +    NL   NE +TL
Subjt:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
TrEMBL top hitse value%identityAlignment
A0A5A7TGC8 Ty3-gypsy retrotransposon protein3.0e-0465.31Show/hide
Query:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
        AKEAVWL+KFLTDLEVVPNM L + YTVT VV +    NL   NE +TL
Subjt:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
A0A5D3DH24 Gag/pol protein3.0e-0465.31Show/hide
Query:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
        AKEAVWL+KFLTDLEVVPNM L + YTVT VV +    NL   NE +TL
Subjt:  AKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVV-VANSRNLAATNESTTL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAACAAATTCAGGAACAAATCAAGTTAACTCGACGAAACCTCACGCGCATGCAAATGTAAAGCCTCACCTAAAGCAGCCCCTACAAGCCCAAGAAAGGCTTATAAC
CTCCTCCACCCATCTTCCCCCTACACTGGCACTAAGGCCTCACACAGAAGCTAAAAGGCGAAAAAAAGGGTCATCACATGAAATAGTCAGTCTCGTCAGTAAACGGTGTT
ATAAAGCAGAGCACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTGCATAGACACCCCACTCGCATGTCTCTACATGGATGATTTAGGATCACATCTCTTACCATCT
ATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGGGCACCAATCCCAACAAGCAGATATCAGTCAAATCCAGCTAAGGAAGCTGTTTGGCTAAGGAAGTTCTTGAC
AGATTTGGAAGTTGTTCCAAATATGAACTTGCTATTACGTTATACTGTGACAACAGTGGTTGTAGCCAATTCAAGGAACCTCGCAGCCACAAACGAGAGCACAACATTGC
TGATCGTTTACGAAGGCCTCTCGGCTAAAGTGTTCAAGGGTCATCTAGAAAGTCTAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGG
GAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAACAAATTCAGGAACAAATCAAGTTAACTCGACGAAACCTCACGCGCATGCAAATGTAAAGCCTCACCTAAAGCAGCCCCTACAAGCCCAAGAAAGGCTTATAAC
CTCCTCCACCCATCTTCCCCCTACACTGGCACTAAGGCCTCACACAGAAGCTAAAAGGCGAAAAAAAGGGTCATCACATGAAATAGTCAGTCTCGTCAGTAAACGGTGTT
ATAAAGCAGAGCACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTGCATAGACACCCCACTCGCATGTCTCTACATGGATGATTTAGGATCACATCTCTTACCATCT
ATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGGGCACCAATCCCAACAAGCAGATATCAGTCAAATCCAGCTAAGGAAGCTGTTTGGCTAAGGAAGTTCTTGAC
AGATTTGGAAGTTGTTCCAAATATGAACTTGCTATTACGTTATACTGTGACAACAGTGGTTGTAGCCAATTCAAGGAACCTCGCAGCCACAAACGAGAGCACAACATTGC
TGATCGTTTACGAAGGCCTCTCGGCTAAAGTGTTCAAGGGTCATCTAGAAAGTCTAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGG
GAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG
Protein sequenceShow/hide protein sequence
MRTNSGTNQVNSTKPHAHANVKPHLKQPLQAQERLITSSTHLPPTLALRPHTEAKRRKKGSSHEIVSLVSKRCYKAEHLFLGPGLMQTHCIDTPLACLYMDDLGSHLLPS
IKWVASHSVSRIRAPIPTSRYQSNPAKEAVWLRKFLTDLEVVPNMNLLLRYTVTTVVVANSRNLAATNESTTLLIVYEGLSAKVFKGHLESLDYAAERLEGANSMLQQNW
EQKLPHHSSLANFMNRLLLSYFRDKGSRRALHVS