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Lag0035360 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035360
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr3:20337650..20338042
RNA-Seq ExpressionLag0035360
SyntenyLag0035360
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]1.9e-2553.1Show/hide
Query:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA
        D +G+++AIRCR F FTLTGS R WF++LKR+SIS FK+LARAF+ QF G   + +P   LLT+KQ+  ESL DY+ RFN E LQVEG ++   L+   +
Subjt:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA

Query:  RLEDERLLNSIGK
         ++DE+L+ S GK
Subjt:  RLEDERLLNSIGK

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]4.5e-2753.85Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R + +P   LLT+KQ+  ESLHDY+ RFN+E LQVEG +   +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S GK  P
Subjt:  ARLEDERLLNSIGKSQP

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.5e-2754.31Show/hide
Query:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA
        D + + +AIRCR F FTLTGSAR+WF +LKR SIS FK+LA AF+ QF+G R + +P   LLT+KQ+  ESL +Y+ RFN+E LQVEG ++  AL+A  +
Subjt:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA

Query:  RLEDERLLNSIGKSQP
         ++DERL+ S GK  P
Subjt:  RLEDERLLNSIGKSQP

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.9e-2654.7Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++  +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S GK  P
Subjt:  ARLEDERLLNSIGKSQP

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]7.7e-2755.56Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ+  ESLHDY+ RFN+E LQ+EG ++  +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S  K  P
Subjt:  ARLEDERLLNSIGKSQP

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166199.1e-2653.1Show/hide
Query:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA
        D +G+++AIRCR F FTLTGS R WF++LKR+SIS FK+LARAF+ QF G   + +P   LLT+KQ+  ESL DY+ RFN E LQVEG ++   L+   +
Subjt:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA

Query:  RLEDERLLNSIGK
         ++DE+L+ S GK
Subjt:  RLEDERLLNSIGK

A0A6J1D7D2 uncharacterized protein LOC1110183072.2e-2753.85Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R + +P   LLT+KQ+  ESLHDY+ RFN+E LQVEG +   +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S GK  P
Subjt:  ARLEDERLLNSIGKSQP

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-2654.7Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++  +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S GK  P
Subjt:  ARLEDERLLNSIGKSQP

A0A6J1DZ49 uncharacterized protein LOC1110248517.5e-2854.31Show/hide
Query:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA
        D + + +AIRCR F FTLTGSAR+WF +LKR SIS FK+LA AF+ QF+G R + +P   LLT+KQ+  ESL +Y+ RFN+E LQVEG ++  AL+A  +
Subjt:  DFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAITA

Query:  RLEDERLLNSIGKSQP
         ++DERL+ S GK  P
Subjt:  RLEDERLLNSIGKSQP

A0A6J1E1E7 uncharacterized protein LOC1110255483.7e-2755.56Show/hide
Query:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT
        MD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ+  ESLHDY+ RFN+E LQ+EG ++  +L+A  
Subjt:  MDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALVAIT

Query:  ARLEDERLLNSIGKSQP
        + + DE L  S  K  P
Subjt:  ARLEDERLLNSIGKSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTGCCGCTGCATGGGGACTTTTATTCCCTTCAGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCCTTCTTTTTCACCCTAACAGGATCAGCCAG
GCATTGGTTTGAGAGACTGAAAAGAAGATCCATCAGTTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACAGCGCCAGCCTCACATCA
ACCTTTTAACAGTCAAACAGCAGCCGGGTGAGAGCTTACATGATTACATAACGCGCTTTAATGACGAAGTACTGCAGGTTGAGGGATACAGTGAGGGAGCGGCCCTAGTA
GCCATCACAGCCAGACTGGAAGACGAAAGACTACTCAACTCAATAGGTAAGAGCCAACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTGCCGCTGCATGGGGACTTTTATTCCCTTCAGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCCTTCTTTTTCACCCTAACAGGATCAGCCAG
GCATTGGTTTGAGAGACTGAAAAGAAGATCCATCAGTTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACAGCGCCAGCCTCACATCA
ACCTTTTAACAGTCAAACAGCAGCCGGGTGAGAGCTTACATGATTACATAACGCGCTTTAATGACGAAGTACTGCAGGTTGAGGGATACAGTGAGGGAGCGGCCCTAGTA
GCCATCACAGCCAGACTGGAAGACGAAAGACTACTCAACTCAATAGGTAAGAGCCAACCCTGA
Protein sequenceShow/hide protein sequence
MRCRCMGTFIPFRMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRQPHINLLTVKQQPGESLHDYITRFNDEVLQVEGYSEGAALV
AITARLEDERLLNSIGKSQP