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Lag0035366 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035366
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Genome locationchr3:20454658..20456076
RNA-Seq ExpressionLag0035366
SyntenyLag0035366
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038287.1 DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]7.6e-1049.32Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLD
        GRLSY LT +++KKAS N    +YLQGFP+ L+YWALE IP+ S   +GF RK+  +   P +  WE L   D
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLD

KAE8651761.1 hypothetical protein Csa_006297 [Cucumis sativus]2.3e-0653.7Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKI
        GRLS+ LT+EY++K   + + +  L GFP +L+ WALEIIPKLSE   G A KI
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKI

TYJ96590.1 hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa]1.5e-0536.42Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS+ LT+EY++KA+ + + +  LQGFP +L+ WALEIIPKLSE   G A +I     +PR+  W++  +  W+ L    F + D T +  T T   + 
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

XP_038891747.1 pescadillo homolog [Benincasa hispida]4.6e-0737.66Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLTTLTGLLIMQ
        GR+S+ELTIE+ KK   N   SI+LQGFP+ L+YWA EIIP+LS  T+GFAR+I+S    PR+  WE  +  DW  ++  IF A         TG     
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLTTLTGLLIMQ

Query:  PHMLLEREIEDEEDDEQEEKEKEKE------EEKENSEDEMDEEEKEEEERNQQ
            +E     +ED +++  EK KE        K+   D++ ++E+  E+++Q+
Subjt:  PHMLLEREIEDEEDDEQEEKEKEKE------EEKENSEDEMDEEEKEEEERNQQ

XP_038896481.1 uncharacterized protein LOC120084732 [Benincasa hispida]2.7e-0741.86Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAED
        GRL + LTIE+ ++ +   S +  L GFP VL+ WA EII KL E+++      Q +    RM  W +  KLDW+ L E IF A D
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAED

TrEMBL top hitse value%identityAlignment
A0A5A7T6C2 Uncharacterized protein2.7e-0536.42Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS+ LT+EY++KA+ + + +  LQGFP VL+ W LEIIPKLSE   G A +I     +PR+  W++  +  W+ L    F + D T +  T T   + 
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

A0A5A7VKZ2 Uncharacterized protein4.6e-0535.76Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS  LT+EY++KA+ + + +  LQGFP +L+ WALEIIPKLS+   G A +I+    +PR+  W++  +  W+ L    F + D T +  T T   ++
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

A0A5D3B9P7 Uncharacterized protein7.2e-0636.42Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS+ LT+EY++KA+ + + +  LQGFP +L+ WALEIIPKLSE   G A +I     +PR+  W++  +  W+ L    F + D T +  T T   + 
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

A0A5D3CVC6 Uncharacterized protein2.7e-0535.76Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS  LT+EY++KA+ + + +  LQGFP +L+ WALEIIPKLS+   G A +I+    +PR+  W++  +  W+ L    F + D T +  T T   ++
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

A0A5D3CVR6 Uncharacterized protein6.1e-0536.42Show/hide
Query:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM
        GRLS+ LT+EY++KA+ + + +  LQGFP VL+ WALEIIPKLSE   G A +I     + R+  W++  +  W+ L    F + D T +  T T   + 
Subjt:  GRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLT-TLTGLLIM

Query:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK
         P+       +   +D   E EKE+ EE E+  D+ DEEE   +E  + ++
Subjt:  QPHMLLEREIEDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGTTGTCATATGAATTAACCATAGAATATATAAAAAAGGCCTCCACAAATACCTCAGGATCCATATATCTCCAGGGATTTCCAATAGTCCTAATATATTGGGC
ATTGGAAATCATTCCAAAATTATCTGAGGAAACCTTAGGATTTGCTAGGAAAATCCAAAGCTCCACCTCTACCCCACGGATGGCTTACTGGGAGATATTGGACAAGCTGG
ATTGGAGCGAGTTGGATGAAAAGATCTTCTCCGCTGAAGATAAGACCCAATTGACAACATTGACAGGATTGTTGATTATGCAACCTCATATGCTACTAGAGAGAGAGATA
GAAGATGAGGAGGATGATGAACAAGAAGAAAAAGAAAAAGAAAAGGAAGAAGAGAAGGAAAATAGTGAAGATGAAATGGATGAAGAAGAAAAAGAAGAAGAGGAAAGAAA
TCAACAGGTAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGTTGTCATATGAATTAACCATAGAATATATAAAAAAGGCCTCCACAAATACCTCAGGATCCATATATCTCCAGGGATTTCCAATAGTCCTAATATATTGGGC
ATTGGAAATCATTCCAAAATTATCTGAGGAAACCTTAGGATTTGCTAGGAAAATCCAAAGCTCCACCTCTACCCCACGGATGGCTTACTGGGAGATATTGGACAAGCTGG
ATTGGAGCGAGTTGGATGAAAAGATCTTCTCCGCTGAAGATAAGACCCAATTGACAACATTGACAGGATTGTTGATTATGCAACCTCATATGCTACTAGAGAGAGAGATA
GAAGATGAGGAGGATGATGAACAAGAAGAAAAAGAAAAAGAAAAGGAAGAAGAGAAGGAAAATAGTGAAGATGAAATGGATGAAGAAGAAAAAGAAGAAGAGGAAAGAAA
TCAACAGGTAAAATAA
Protein sequenceShow/hide protein sequence
MGRLSYELTIEYIKKASTNTSGSIYLQGFPIVLIYWALEIIPKLSEETLGFARKIQSSTSTPRMAYWEILDKLDWSELDEKIFSAEDKTQLTTLTGLLIMQPHMLLEREI
EDEEDDEQEEKEKEKEEEKENSEDEMDEEEKEEEERNQQVK