; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035375 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035375
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr3:20603285..20603650
RNA-Seq ExpressionLag0035375
SyntenyLag0035375
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-2660Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+HS +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-2658.33Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EE+NQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+H+ +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-2659.17Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T++Q KR++ + + K F E N+D K+HS +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]3.5e-2659.17Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+HS +PSRMKRK S+ INT+GSL  K  L
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]8.4e-2860.83Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST TR SAF+RLS+STSKK +PSTS F RPK+T++Q +R++ +L+ KLF E N D K+HS +PSRMKRK SV INTE SL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein7.7e-2760Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+HS +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
A0A5A7UI09 Retrotransposon gag protein2.9e-2658.33Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EE+NQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+H+ +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
A0A5D3D209 Retrotransposon gag protein2.2e-2659.17Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T++Q KR++ + + K F E N+D K+HS +PSRMKRK SV INTEGSL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
A0A5D3D5Q0 Gag protease polyprotein1.7e-2659.17Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST  R SAF+RLS+STSKK +PSTS F R K+T+DQ +R++ +L+ K F E N+D K+HS +PSRMKRK S+ INT+GSL  K  L
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
A0A5D3E2D7 Gag protease polyprotein4.1e-2860.83Show/hide
Query:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL
        +SM T EEENQC  ST TR SAF+RLS+STSKK +PSTS F RPK+T++Q +R++ +L+ KLF E N D K+HS +PSRMKRK SV INTE SL  K   
Subjt:  MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNL

Query:  IILTNPINEGYDQNHDKDKS
        II TNPINEG ++  D++KS
Subjt:  IILTNPINEGYDQNHDKDKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCACGGCAGAAGAAGAAAATCAATGTTCAGTGTCCACCACCACTCGACCTTCAGCTTTCCAAAGGTTAAGTGTTTCCACATCGAAGAAAAGTCAACCTTC
AACATCTGTTTTTTATCGCCCCAAAGTAACAAGTGATCAATCTAAAAGAAAGGTGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATA
GTAGCATCCCGTCACGCATGAAGAGGAAGTTCTCTGTTATCATAAATACAGAAGGTTCTTTGAAGGAGAAGTTAAATCTCATTATCTTGACCAATCCTATAAATGAAGGA
TATGATCAAAACCATGATAAAGACAAAAGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCACGGCAGAAGAAGAAAATCAATGTTCAGTGTCCACCACCACTCGACCTTCAGCTTTCCAAAGGTTAAGTGTTTCCACATCGAAGAAAAGTCAACCTTC
AACATCTGTTTTTTATCGCCCCAAAGTAACAAGTGATCAATCTAAAAGAAAGGTGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATA
GTAGCATCCCGTCACGCATGAAGAGGAAGTTCTCTGTTATCATAAATACAGAAGGTTCTTTGAAGGAGAAGTTAAATCTCATTATCTTGACCAATCCTATAAATGAAGGA
TATGATCAAAACCATGATAAAGACAAAAGTTTTTAA
Protein sequenceShow/hide protein sequence
MSMVTAEEENQCSVSTTTRPSAFQRLSVSTSKKSQPSTSVFYRPKVTSDQSKRKVDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSVIINTEGSLKEKLNLIILTNPINEG
YDQNHDKDKSF