CuGenDBv2

Gene ID	Lag0035383
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Protein Ycf2
Genome location	chr3:20657440..20660707
RNA-Seq Expression	Lag0035383
Synteny	Lag0035383
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

CUR04389.1 ycf2 [Acacia longispinea]

7.0e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+FSNSD IDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

CUR04479.1 ycf2 [Acacia longispinea]

7.0e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+FSNSD IDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

QOS04304.1 Ycf2 [Craigia yunnanensis]

5.4e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+F+NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

THU42217.1 hypothetical protein C4D60_Mb00t11760 [Musa balbisiana]

7.0e-21

86.36

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Query:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        L DL  S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

YP_010020779.1 hypothetical protein RF2 [Dendropanax oligodontus]

7.0e-21

84.85

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Query:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        +YD   S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

TrEMBL top hits

e value

%identity

Alignment

A0A0C5AH70 Protein Ycf2

3.4e-21

84.85

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Query:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        +YD   S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A0A1D0C304 Protein Ycf2

3.4e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+FSNSD IDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A0A1D0C378 Protein Ycf2

3.4e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+FSNSD IDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A0A7L9K2X3 Protein Ycf2

3.4e-21

84.85

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Query:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        +YD   S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  LYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A0A7M1VLF9 Protein Ycf2

2.6e-21

93.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+F+NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

4.6e-23

91.67

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A1XGT0 Protein Ycf2

6.0e-23

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

A6MM80 Protein Ycf2

7.8e-23

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

Q06GT4 Protein Ycf2

7.8e-23

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDD+EREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

Q2L949 Protein Ycf2

4.6e-23

91.67

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

6.1e-23

88.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

6.1e-23

88.33

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Query:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL
        S+ +NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHLSKNDSGYQMIEQPG  YL
Subjt:  SYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYL

Sequences

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CDS sequence

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ATGGACCCAATAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTACTCGGCGATGGACTGAGGCCGACCCTCAGCCCACT
CGCACGGGTCGAGCCCGTCCGACTCCGCTTGGTCCCTACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCA
TCAGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTATCGATTATCACGTGGAGCGAAGCTCCGATTTGAGCGAATCAAGAGGCGTTGGAATCGTTGTTCGAAGA
TCTACGCTTGAGAAACTGTATGACTTAGATGTCTCATATTTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTTTTGGTTCAGTTCTCCACCTTAACGACAGA
AAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGGGGCGTACTTGGTCATTC
GGAGTGTTTCATTTCAGATTCATGGCTTATCCACAAATAAAATAGGAAAAGCAGAAGATTTCGAGATCCTGCATCGAAAAGTCAATTTCTGCAAAAGAAAAATGAGGGAA
GAGGATAGGGTCGACCTCGGCCTTAAGCCCCTATTAGCCCAAAACTTAGCTCCATGCACTTATTCGTCAGTCCTTGTAGAAAAGTAA

mRNA sequence

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Protein sequence

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MDPIGETGKWDGPRPKGSGFWPDPLLGDGLRPTLSPLARVEPVRLRLVPTAFGRLGFAWFVPKRLRIPKNPRSISRPRLPPLSNKFTIDYHVERSSDLSESRGVGIVVRR
STLEKLYDLDVSYFSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGGAYLVIRSVSFQIHGLSTNKIGKAEDFEILHRKVNFCKRKMRE
EDRVDLGLKPLLAQNLAPCTYSSVLVEK

Lag0035383 (gene) of Sponge gourd (AG-4) v1 genome