CuGenDBv2

Gene ID	Lag0035386
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	cleavage stimulating factor 64
Genome location	chr3:20698417..20703805
RNA-Seq Expression	Lag0035386
Synteny	Lag0035386
Gene Ontology terms	GO:0031047 - gene silencing by RNA (biological process) GO:0042868 - antisense RNA metabolic process (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0048589 - developmental growth (biological process) GO:0098789 - pre-mRNA cleavage required for polyadenylation (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578854.1 Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGP+TA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK  PFS+GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

KAG7016387.1 Cleavage stimulating factor 64 [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGP+TA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK  PFS+GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

XP_008456694.1 PREDICTED: cleavage stimulating factor 64 [Cucumis melo]

5.1e-37

77.67

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        I NPEA+PSLLPHPS+SD +FQPGPSTAYS  QIVGSDVDKSS VPLGVDGKR +LH FSGTTNRPVKQIKLEDGK +PFSAGGLS S+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

XP_022939679.1 cleavage stimulating factor 64-like isoform X2 [Cucurbita moschata]

6.6e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGP+TA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK  PFS+GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

XP_038885247.1 LOW QUALITY PROTEIN: cleavage stimulating factor 64 [Benincasa hispida]

6.4e-40

83.5

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IANPEA+PSLLPHPSLSDA+FQPGPSTAY AS IVGSDVDKSSQVPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK +PFSAGGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C3F6 cleavage stimulating factor 64

2.5e-37

77.67

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        I NPEA+PSLLPHPS+SD +FQPGPSTAYS  QIVGSDVDKSS VPLGVDGKR +LH FSGTTNRPVKQIKLEDGK +PFSAGGLS S+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

A0A5D3BZN4 Cleavage stimulating factor 64

2.5e-37

77.67

Show/hide

Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        I NPEA+PSLLPHPS+SD +FQPGPSTAYS  QIVGSDVDKSS VPLGVDGKR +LH FSGTTNRPVKQIKLEDGK +PFSAGGLS S+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

A0A6J1FHX2 cleavage stimulating factor 64-like isoform X2

3.2e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGP+TA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK  PFS+GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

A0A6J1FMA3 cleavage stimulating factor 64-like isoform X1

3.2e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGP+TA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTTNRPVKQIKLEDGK  PFS+GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

A0A6J1JW71 cleavage stimulating factor 64-like isoform X3

9.3e-37

78.64

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Query:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP
        IA+PEA+PSLLPHPSLSDA+FQPGPSTA S SQIVGSD+DKSS VPLGVDGKRN+LH FSGTT+RPVKQIKLEDGK  PFS GGLSAS+GTNG   L + 
Subjt:  IANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELP

Query:  QIP
          P
Subjt:  QIP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGATGGCTCTCTCAGGGAAAAATAAAGAAGGTTTTATCGATGGATCCATTAAGAAACCGACTTCTTCAAAACTGGCAAAGGCTTGGAAGTGCAACAATGACATTAT
AGCTTCTTGGATTATAAATTTTGTTTCCAAGGAGATTGCCGCAAGTATTGTCTACTCTGGTTGTGTCAAAGATGTTTGGGACGAATTGGTCGCCGCCCTTCCTCGTCGTT
TTCGTCTTGGCACAGCAAGGTCGCACAACCCTGTGCCGTTTTCTTTGCAGACGGTCGTTACACACGCGCTCACGCTCCTGCGCAAATTTTTTTATAAAGTTGAATGCAGG
AGGCAGATGATTGCTAATCCAGAAGCTAGACCTTCTCTTTTGCCTCACCCTTCCTTATCAGATGCAAATTTTCAGCCTGGGCCCTCCACAGCGTATAGTGCATCTCAAAT
AGTTGGTAGTGATGTTGATAAGTCTTCTCAAGTTCCTCTTGGTGTAGATGGTAAAAGAAATATACTTCATGACTTTTCAGGAACAACTAATCGCCCTGTAAAGCAGATAA
AATTAGAGGATGGAAAAAGCAACCCTTTTTCAGCTGGAGGTCTAAGTGCATCAGTAGGTACCAATGGATTGGACAACTTAGAATTGCCTCAGATCCCAATGTGGCGGAAA
TGCAAATCTCTGAGAAACCAACTTCAGTGCTTAACTCGTTGTCGCTCGAACAGAGCCAGCAAGTTGTTAAGCTCCAGCAAGCACTTCGCAGAGATCAAATGCAACCATCC
TAGCAAACAAATTGCCACTGATCAACCCGACACTCTCGGCAGCTCCGCTCCGAGCAACAACTGCTGGCAGGCCAAAACCAAAGCAAAGGAGAAGCTCCTTGCCAAGGAAG
CTGCTCAAAGGGTGCTAAGTGATCGTTTTGAGTTTAAATGA

mRNA sequence

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Protein sequence

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MMMALSGKNKEGFIDGSIKKPTSSKLAKAWKCNNDIIASWIINFVSKEIAASIVYSGCVKDVWDELVAALPRRFRLGTARSHNPVPFSLQTVVTHALTLLRKFFYKVECR
RQMIANPEARPSLLPHPSLSDANFQPGPSTAYSASQIVGSDVDKSSQVPLGVDGKRNILHDFSGTTNRPVKQIKLEDGKSNPFSAGGLSASVGTNGLDNLELPQIPMWRK
CKSLRNQLQCLTRCRSNRASKLLSSSKHFAEIKCNHPSKQIATDQPDTLGSSAPSNNCWQAKTKAKEKLLAKEAAQRVLSDRFEFK

Lag0035386 (gene) of Sponge gourd (AG-4) v1 genome