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Lag0035390 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035390
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr3:20755135..20757995
RNA-Seq ExpressionLag0035390
SyntenyLag0035390
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW15097.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.5e-1733.33Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                        +RN+L+GF VG+NR  V+ LQFADD
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD

Query:  TMIFAQMRKR------------SWISG-------GNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP
        T+ F+  R+               ISG        N     FWDP++++ + +LD W+   LS GGRITL QS L  +P Y  SL K P
Subjt:  TMIFAQMRKR------------SWISG-------GNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP

RVW35353.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.0e-1831.63Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                        ERN+L+GF VG+NR  V+ LQ ADD
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD

Query:  TMIFAQMRKRSWIS--------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP
        T+ F+  R+    +                          GGN     FWDP++++ + +LD W+   LS GGRITL QS+L  +P Y  SL K P
Subjt:  TMIFAQMRKRSWIS--------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP

RVW46162.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.8e-1631.28Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF
        QI+D IL+ NE  +E R +++EG++ K+D E+AYD                                + +        ERN L+GF VG+N+  V+ LQF
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF

Query:  ADDTMIFAQM------------------------RKRSWISGGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLK
        ADDT+ F+                           ++S   GGN     FWDP++++ + + D W+   LS GGRITL  S L  IP Y  SL K
Subjt:  ADDTMIFAQM------------------------RKRSWISGGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLK

RVX15688.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.4e-1831.84Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                Y +        ERN+L+GF VG+NR  V+ LQF
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF

Query:  ADDTMIFAQMRKRSWIS----------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKA
        ADDT+ F+  R+    +                            GGN     FWDP++++ + +LD W+   LS GGRITL QS L  +P Y+ SL K 
Subjt:  ADDTMIFAQMRKRSWIS----------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKA

Query:  P
        P
Subjt:  P

TYK11201.1 SIL1 [Cucumis melo var. makuwa]1.5e-1755Show/hide
Query:  MPSMVGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTIL
        M  +VGPF C LC+KA+EDLD+L W C+  R+VW+   + F    VGQR  R  IEEFLLHPPF EK   LWLA VC ++
Subjt:  MPSMVGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTIL

TrEMBL top hitse value%identityAlignment
A0A438BW25 Transposon TX1 uncharacterized 149 kDa protein7.4e-1833.33Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                        +RN+L+GF VG+NR  V+ LQFADD
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD

Query:  TMIFAQMRKR------------SWISG-------GNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP
        T+ F+  R+               ISG        N     FWDP++++ + +LD W+   LS GGRITL QS L  +P Y  SL K P
Subjt:  TMIFAQMRKR------------SWISG-------GNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP

A0A438DIR5 Transposon TX1 uncharacterized 149 kDa protein1.9e-1831.63Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                        ERN+L+GF VG+NR  V+ LQ ADD
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCI------------------------------------ERNILKGFSVGKNRVEVAMLQFADD

Query:  TMIFAQMRKRSWIS--------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP
        T+ F+  R+    +                          GGN     FWDP++++ + +LD W+   LS GGRITL QS+L  +P Y  SL K P
Subjt:  TMIFAQMRKRSWIS--------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAP

A0A438K3D0 Transposon TX1 uncharacterized 149 kDa protein6.7e-1931.84Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF
        QI+D +L+ NE  +E R + +EG++ K+D E+AYD                                Y +        ERN+L+GF VG+NR  V+ LQF
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYD-------------------------------KYCI--------ERNILKGFSVGKNRVEVAMLQF

Query:  ADDTMIFAQMRKRSWIS----------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKA
        ADDT+ F+  R+    +                            GGN     FWDP++++ + +LD W+   LS GGRITL QS L  +P Y+ SL K 
Subjt:  ADDTMIFAQMRKRSWIS----------------------------GGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKA

Query:  P
        P
Subjt:  P

A0A5D3CHC7 SIL17.4e-1855Show/hide
Query:  MPSMVGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTIL
        M  +VGPF C LC+KA+EDLD+L W C+  R+VW+   + F    VGQR  R  IEEFLLHPPF EK   LWLA VC ++
Subjt:  MPSMVGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTIL

A0A803PZS1 Uncharacterized protein1.4e-1630.8Show/hide
Query:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCIERNIL------KGFSV----------------------------GKNRVEVAMLQFADDTM
        QI+D +L+ NE  EEYR   K+G + K+DLE+AYD  C++ + L      KGF                              GK+ V+++ LQFADDT+
Subjt:  QIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCIERNIL------KGFSV----------------------------GKNRVEVAMLQFADDTM

Query:  IF----AQMRKRSWI---------------------------------------------------SGGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGG
         F    A +RK   I                                                    GG+  +  FW+P++DK   +LD W+   LS+GG
Subjt:  IF----AQMRKRSWI---------------------------------------------------SGGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGG

Query:  RITLAQSFLNSIPIYHFSLLKAPK
        R+TL QS L+S+PIY+ SL KAPK
Subjt:  RITLAQSFLNSIPIYHFSLLKAPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.3e-0526Show/hide
Query:  VGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTILWGLWGERNNRIFRGLERNPCELFK
        V P CC LC  A E  DHLL GC F++++WS         ++      E++    +          L      ++++  W +RNN +      +P  +FK
Subjt:  VGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTILWGLWGERNNRIFRGLERNPCELFK

AT4G29090.1 Ribonuclease H-like superfamily protein1.2e-0430Show/hide
Query:  CILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLH-----PPFCEKGRFLWLASVCTILWGLWGERNNRIFRGLERNPCELFK
        CI C   +E ++HLL+ C FAR  W+           G+      +  + +       P  EK   L    V  +LW LW  RN  +FRG E N  E+ +
Subjt:  CILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLH-----PPFCEKGRFLWLASVCTILWGLWGERNNRIFRGLERNPCELFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCCATGGTTGGCCCCTTTTGTTGCATTCTTTGTCGGAAGGCGGAGGAAGATCTTGATCATCTGTTATGGGGTTGTGAGTTTGCCCGCTCTGTTTGGAGCCGTTG
CTTTGAGGTTTTTGGGTATCAAACTGTGGGCCAGCGGTGCTGTAGGGAGATGATCGAGGAGTTCCTCCTCCATCCGCCTTTCTGTGAGAAAGGAAGATTTTTATGGCTTG
CTAGTGTTTGCACCATTCTGTGGGGTTTGTGGGGGGAGAGGAACAATAGAATTTTTAGAGGTCTTGAGAGAAATCCTTGTGAGTTGTTTAAGAACAGGCTTCATTCGGTA
GCCTCGATTTTCCCTAGTTTCGATTTTCTTCTCCTTCCCTTGGTTTTCGTTGCTCCCTCACCGATTGAGAGGCGACAGAGGTCGTCAACCTCTCTCTCTTGGCTGAGCAG
TCTTTTCGTCCTGAGAGAAGGGACACTAGGTTCTGGACTCCGGAGCCCTCTAAGGGTTTCTCTTGTGCGTCTTTTTTCCCCTTCTCTCTCCTCTCCTCTTCCTCCTCTGG
GAGTCTCCATTTTTTCCTCTTTGTGGAAGCCGCAGTGGTGTGTCCTTTGTAGGAGGCAGGAGGAAGACTTGAGCCGCAGTGGTGTGTCCTTTGTAGGAGCAGAAAGAAGA
CTTGGATCACTTGCTTTGGGATTGTCCTTTTGTTTGCTCTATTTGGAGCCAGTTCTTCAGGGTTTTTGGGGTTGCCTTGACTCGTCTTATTCTTTTGGATTGGGACCCAT
TCCTGTAGTTTGGCAGATTGTAGATCTGATTCTTGTGGATAATGAAGCAGGGGAAGAGTATAGGATCAATAAGAAAGAGGGCCTCTTGATGAAGCTTGATCTTGAGAGAG
CCTATGATAAGTATTGCATCGAAAGGAATATTTTGAAGGGCTTTTCGGTGGGAAAAAACAGAGTTGAGGTGGCCATGCTTCAATTTGCTGATGACACCATGATTTTTGCC
CAAATGAGGAAGAGATCATGGATAAGTGGAGGAAACCACCATAGGATTGCGTTCTGGGATCCTTTGGTGGACAAATTCAATGCCAAGTTGGATGTGTGGAGGCACTTTAT
TTTATCAAAGGGTGGTAGAATTACCTTGGCTCAATCCTTCCTTAATAGCATCCCAATTTACCATTTCTCTTTGCTGAAAGCTCCAAAACAATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCCATGGTTGGCCCCTTTTGTTGCATTCTTTGTCGGAAGGCGGAGGAAGATCTTGATCATCTGTTATGGGGTTGTGAGTTTGCCCGCTCTGTTTGGAGCCGTTG
CTTTGAGGTTTTTGGGTATCAAACTGTGGGCCAGCGGTGCTGTAGGGAGATGATCGAGGAGTTCCTCCTCCATCCGCCTTTCTGTGAGAAAGGAAGATTTTTATGGCTTG
CTAGTGTTTGCACCATTCTGTGGGGTTTGTGGGGGGAGAGGAACAATAGAATTTTTAGAGGTCTTGAGAGAAATCCTTGTGAGTTGTTTAAGAACAGGCTTCATTCGGTA
GCCTCGATTTTCCCTAGTTTCGATTTTCTTCTCCTTCCCTTGGTTTTCGTTGCTCCCTCACCGATTGAGAGGCGACAGAGGTCGTCAACCTCTCTCTCTTGGCTGAGCAG
TCTTTTCGTCCTGAGAGAAGGGACACTAGGTTCTGGACTCCGGAGCCCTCTAAGGGTTTCTCTTGTGCGTCTTTTTTCCCCTTCTCTCTCCTCTCCTCTTCCTCCTCTGG
GAGTCTCCATTTTTTCCTCTTTGTGGAAGCCGCAGTGGTGTGTCCTTTGTAGGAGGCAGGAGGAAGACTTGAGCCGCAGTGGTGTGTCCTTTGTAGGAGCAGAAAGAAGA
CTTGGATCACTTGCTTTGGGATTGTCCTTTTGTTTGCTCTATTTGGAGCCAGTTCTTCAGGGTTTTTGGGGTTGCCTTGACTCGTCTTATTCTTTTGGATTGGGACCCAT
TCCTGTAGTTTGGCAGATTGTAGATCTGATTCTTGTGGATAATGAAGCAGGGGAAGAGTATAGGATCAATAAGAAAGAGGGCCTCTTGATGAAGCTTGATCTTGAGAGAG
CCTATGATAAGTATTGCATCGAAAGGAATATTTTGAAGGGCTTTTCGGTGGGAAAAAACAGAGTTGAGGTGGCCATGCTTCAATTTGCTGATGACACCATGATTTTTGCC
CAAATGAGGAAGAGATCATGGATAAGTGGAGGAAACCACCATAGGATTGCGTTCTGGGATCCTTTGGTGGACAAATTCAATGCCAAGTTGGATGTGTGGAGGCACTTTAT
TTTATCAAAGGGTGGTAGAATTACCTTGGCTCAATCCTTCCTTAATAGCATCCCAATTTACCATTTCTCTTTGCTGAAAGCTCCAAAACAATTATAA
Protein sequenceShow/hide protein sequence
MPSMVGPFCCILCRKAEEDLDHLLWGCEFARSVWSRCFEVFGYQTVGQRCCREMIEEFLLHPPFCEKGRFLWLASVCTILWGLWGERNNRIFRGLERNPCELFKNRLHSV
ASIFPSFDFLLLPLVFVAPSPIERRQRSSTSLSWLSSLFVLREGTLGSGLRSPLRVSLVRLFSPSLSSPLPPLGVSIFSSLWKPQWCVLCRRQEEDLSRSGVSFVGAERR
LGSLALGLSFCLLYLEPVLQGFWGCLDSSYSFGLGPIPVVWQIVDLILVDNEAGEEYRINKKEGLLMKLDLERAYDKYCIERNILKGFSVGKNRVEVAMLQFADDTMIFA
QMRKRSWISGGNHHRIAFWDPLVDKFNAKLDVWRHFILSKGGRITLAQSFLNSIPIYHFSLLKAPKQL