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Lag0035394 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035394
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:20815440..20816359
RNA-Seq ExpressionLag0035394
SyntenyLag0035394
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7533614.1 Zinc knuckle CX2CX4HX4C [Arabidopsis thaliana x Arabidopsis arenosa]3.1e-2252.43Show/hide
Query:  HWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFVD
        HW  W+K+CL K LGGL FRDIE FNQAL+AKQ WRLL NP SL AR  K  Y ++   LEA++   PS+ W+S++ GR L + GL    EV  NG+ + 
Subjt:  HWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFVD

Query:  RWM
         WM
Subjt:  RWM
KAG7548336.1 Zinc knuckle CX2CX4HX4C [Arabidopsis suecica]1.1e-2253.85Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFV
        +HW  W+KLCL K+ GGL FRDIE FNQAL+AKQ WRL+ NP SL AR  K  Y N+ + LEAD+   PSF W+S++ GR L + GL    EV  NG  +
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFV

Query:  DRWM
          WM
Subjt:  DRWM
XP_009140188.1 uncharacterized protein LOC103864181 [Brassica rapa]3.7e-2353.77Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFV
        +HW  WDKLCL K  GGL FRD+E FNQAL+AKQ W++LS+PESLVAR LK  Y      LEA L K PS+ W+S+++GR L   G+      D N  FV
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFV

Query:  --DRWM
          DRW+
Subjt:  --DRWM
XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]3.7e-2354.64Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEV
        +HW KW+KLC  K  GG+ FRD   FNQALIAKQ WR++ +PESL+ARVLK  Y N+S+ +EA L   PSF+W+S++WGR +   GL    GSG +V
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEV
XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.5e-2451.85Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW  W+++CL K LGGLNFRD+EGFNQAL+AKQVWR+L NP  LV+RVLK  Y ++S +L+A   +N S+ WK  IWGR L + GL    G+G  ++  
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWM
          F D W+
Subjt:  GSFVDRWM
TrEMBL top hitse value%identityAlignment
A0A1J3G0X8 Putative mitochondrial protein2.0e-2251.85Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW  W+K+CL K LGG+ FRDIE FNQAL+AKQ WR+L + ESL ARVLK  Y   +  LEA +   PSF WKS+IWGR L   GL    G+G  ++  
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWM
          +VD W+
Subjt:  GSFVDRWM
A0A1J3ILI6 Putative mitochondrial protein (Fragment)2.3e-2350Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW  W+K+CL KSLGG+ FRDIE  NQAL+AKQ WR+L  PESL+AR LK IY   ++ L++ L   PSF WKS++WGR L   GL    G+G  ++  
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWM
          ++D W+
Subjt:  GSFVDRWM
A0A1J3IQG5 Putative mitochondrial protein (Fragment)1.0e-2349.54Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW  W+K+CL K LGG++FRDIE FNQAL+AKQ WR+L +PESL+AR+LK  Y  + + L + + K PSF WKS++WGR+L   GL    G+G  ++  
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWML
          + DRW++
Subjt:  GSFVDRWML
A0A6J1BRN0 uncharacterized protein LOC1110047877.3e-2551.85Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW  W+++CL K LGGLNFRD+EGFNQAL+AKQVWR+L NP  LV+RVLK  Y ++S +L+A   +N S+ WK  IWGR L + GL    G+G  ++  
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWM
          F D W+
Subjt:  GSFVDRWM
M5W5F3 Reverse transcriptase domain-containing protein (Fragment)2.6e-2249.07Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN
        +HW KW+ LC  K  GGL FRD+E FNQAL+AKQ WR+L  PESLVAR+ +  Y      LEA++  NPSFIW+S+ WG+ L   GL    GSG  +   
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFN

Query:  GSFVDRWM
          + D+W+
Subjt:  GSFVDRWM
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.5e-0633.93Show/hide
Query:  HWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYS----NESNILEADLRKNPSFIWKSMIWG-RSLRMNGL----GSGWE
        H  KW K+C  K  GGL  R  +  N+ALI+K  WRLL    SL   VL+  Y      +S  L    + + S  W+S+  G R +  +G+    G G +
Subjt:  HWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYS----NESNILEADLRKNPSFIWKSMIWG-RSLRMNGL----GSGWE

Query:  VDFNGSFVDRWM
        + F   + DRW+
Subjt:  VDFNGSFVDRWM
P93295 Uncharacterized mitochondrial protein AtMg003107.8e-1639.81Show/hide
Query:  WCKWDKLCLHK-SLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFNG
        W  W KLC  K   GGL FRD+  FNQAL+AKQ +R++  P +L++R+L+  Y   S+++E  +   PS+ W+S+I GR L   GL    G G       
Subjt:  WCKWDKLCLHK-SLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFNG

Query:  SFVDRWML
         ++DRW++
Subjt:  SFVDRWML
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.4e-2045.36Show/hide
Query:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNG----LGSGWEV
        MHW  WD L  +K+ GG+ F+DIE FN AL+ KQ+WR+LS PESL+A+V K  Y ++S+ L A L   PSF+WKS+   + +   G    +G+G ++
Subjt:  MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNG----LGSGWEV
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.5e-1739.81Show/hide
Query:  WCKWDKLCLHK-SLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFNG
        W  W KLC  K   GGL FRD+  FNQAL+AKQ +R++  P +L++R+L+  Y   S+++E  +   PS+ W+S+I GR L   GL    G G       
Subjt:  WCKWDKLCLHK-SLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGL----GSGWEVDFNG

Query:  SFVDRWML
         ++DRW++
Subjt:  SFVDRWML

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGGTGCAAGTGGGACAAACTCTGTCTTCATAAGAGTTTAGGAGGCCTCAACTTCAGGGATATTGAAGGCTTTAATCAAGCCCTCATAGCTAAGCAAGTATGGAG
ACTCCTATCCAATCCGGAATCACTAGTTGCTAGAGTTCTTAAAGGGATTTATTCCAATGAATCTAATATTCTAGAGGCGGACCTAAGGAAGAATCCCTCTTTCATTTGGA
AAAGTATGATTTGGGGTAGAAGTCTACGAATGAATGGCTTAGGTTCAGGTTGGGAGGTCGATTTCAATGGAAGCTTCGTGGACAGATGGATGCTTATCAACTCAAGCTGC
AGTCTTGAGGAGCTTGGGTTGGTTGTTGTAACCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGGTGCAAGTGGGACAAACTCTGTCTTCATAAGAGTTTAGGAGGCCTCAACTTCAGGGATATTGAAGGCTTTAATCAAGCCCTCATAGCTAAGCAAGTATGGAG
ACTCCTATCCAATCCGGAATCACTAGTTGCTAGAGTTCTTAAAGGGATTTATTCCAATGAATCTAATATTCTAGAGGCGGACCTAAGGAAGAATCCCTCTTTCATTTGGA
AAAGTATGATTTGGGGTAGAAGTCTACGAATGAATGGCTTAGGTTCAGGTTGGGAGGTCGATTTCAATGGAAGCTTCGTGGACAGATGGATGCTTATCAACTCAAGCTGC
AGTCTTGAGGAGCTTGGGTTGGTTGTTGTAACCTGCTGA
Protein sequenceShow/hide protein sequence
MHWCKWDKLCLHKSLGGLNFRDIEGFNQALIAKQVWRLLSNPESLVARVLKGIYSNESNILEADLRKNPSFIWKSMIWGRSLRMNGLGSGWEVDFNGSFVDRWMLINSSC
SLEELGLVVVTC