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Lag0035405 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035405
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationchr3:21026823..21027230
RNA-Seq ExpressionLag0035405
SyntenyLag0035405
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_042962749.1 uncharacterized protein LOC122297028 [Carya illinoinensis]1.1e-0439.77Show/hide
Query:  LEAKAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMA
        +EA AVL GL+F +    +GIN     L++ES+ + ++N+LN   E +S+ +++I+EIR ++  F E+SF+   R  N VA  LAR A
Subjt:  LEAKAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMA
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.7e-0436.23Show/hide
Query:  INLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAI
        + L    LLV S++ S+V+ LN  +  ++EI  L+ EIR+++  F+ +SF F PR  N +AD  A++++
Subjt:  INLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAI
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0434.02Show/hide
Query:  KAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAIPSPPLIPALES
        +A LE L++ +  +      ++  ++ ES+A ++VNLLN  D+    +   +E+I+ L  +F+EV F F PR  N VAD +AR +I      P L S
Subjt:  KAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAIPSPPLIPALES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAGGCGAAGGCTGTCCTTGAAGGCCTGAAATTCACCATTTCGGTTGTTGATTTTGGTATTAATTTGAGCCACCTTTCGCTGTTAGTGGAATCAAATGCAATCTC
TGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCGGAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGAAGATGAATTTCAAGGAGGTTTCCTTTTTGTTTT
GCCCTAGGGATCAAAATGTTGTTGCTGATCTGTTGGCGCGCATGGCTATCCCTTCCCCTCCCCTTATTCCCGCGTTGGAATCCTCTCCCATGGTGGAAGAAGGAGTGGGT
TTTTGGTATGGGCCTCCCCCATCTAGCATTAAAGGCATCTTAAAGGAGGTTGGTGTATCCAATTTTATTTTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAGGCGAAGGCTGTCCTTGAAGGCCTGAAATTCACCATTTCGGTTGTTGATTTTGGTATTAATTTGAGCCACCTTTCGCTGTTAGTGGAATCAAATGCAATCTC
TGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCGGAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGAAGATGAATTTCAAGGAGGTTTCCTTTTTGTTTT
GCCCTAGGGATCAAAATGTTGTTGCTGATCTGTTGGCGCGCATGGCTATCCCTTCCCCTCCCCTTATTCCCGCGTTGGAATCCTCTCCCATGGTGGAAGAAGGAGTGGGT
TTTTGGTATGGGCCTCCCCCATCTAGCATTAAAGGCATCTTAAAGGAGGTTGGTGTATCCAATTTTATTTTTCCTTAA
Protein sequenceShow/hide protein sequence
MLEAKAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAIPSPPLIPALESSPMVEEGVG
FWYGPPPSSIKGILKEVGVSNFIFP