CuGenDBv2

Gene ID	Lag0035434
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	pentatricopeptide repeat-containing protein At1g08610
Genome location	chr3:21428507..21428968
RNA-Seq Expression	Lag0035434
Synteny	Lag0035434
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038403.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.2e-68

86.18

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVTVNG HECSKQEY STGIGQC LEKEK SSLHLNCLCKSSC SSYSCHWS TLGFGRK RVL  KG+QRSVCIDRVD+ YEDEL LNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E+MTK +R+SSHNGSSLYLDGPFVGNDE+TNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

XP_004142592.1 pentatricopeptide repeat-containing protein At1g08610 [Cucumis sativus]

1.5e-61

80.92

Show/hide

Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAY LTVQNYMVTVNGLHECSKQEY STGIGQC LEKEK SSLHL  LCK+S + SYSCHWS TLG GRK RVL  KG+QRSVCIDRVDD YEDELALNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E++TK +R  SHN SSLYLDGPFVGNDEETNN ILQKFC KG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

XP_008443760.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis melo]

1.2e-68

86.18

Show/hide

Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVTVNG HECSKQEY STGIGQC LEKEK SSLHLNCLCKSSC SSYSCHWS TLGFGRK RVL  KG+QRSVCIDRVD+ YEDEL LNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E+MTK +R+SSHNGSSLYLDGPFVGNDE+TNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

XP_022158526.1 pentatricopeptide repeat-containing protein At1g08610 [Momordica charantia]

1.4e-64

84.21

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLT QNY VT +GLHECSKQEYVST I QC +  EK S+LHLNCLCKSSCSSSYSCHWSA LG  RKLRVL  +GVQRSVCIDRVDDAY+DELALNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN+FEQMTK +RLSSHNGSSLYLDGPFVGND ETNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

XP_038880487.1 pentatricopeptide repeat-containing protein At1g08610 [Benincasa hispida]

1.1e-67

86.18

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVTVNGLHECSKQEY +TGIGQCSLEKEK SSLHLNC CKSSCSSSYSCH S TLG GRK  VL  KG+QRSVCIDRVDDAYEDELALNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE  VERN  E+MTK ++LSSHNGS+LYLDGPFVGNDEETNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY76 Uncharacterized protein

7.1e-62

80.92

Show/hide

Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAY LTVQNYMVTVNGLHECSKQEY STGIGQC LEKEK SSLHL  LCK+S + SYSCHWS TLG GRK RVL  KG+QRSVCIDRVDD YEDELALNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E++TK +R  SHN SSLYLDGPFVGNDEETNN ILQKFC KG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

A0A1S3B8B2 pentatricopeptide repeat-containing protein At1g08610

6.0e-69

86.18

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVTVNG HECSKQEY STGIGQC LEKEK SSLHLNCLCKSSC SSYSCHWS TLGFGRK RVL  KG+QRSVCIDRVD+ YEDEL LNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E+MTK +R+SSHNGSSLYLDGPFVGNDE+TNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

A0A5A7T640 Pentatricopeptide repeat-containing protein

6.0e-69

86.18

Show/hide

Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVTVNG HECSKQEY STGIGQC LEKEK SSLHLNCLCKSSC SSYSCHWS TLGFGRK RVL  KG+QRSVCIDRVD+ YEDEL LNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN  E+MTK +R+SSHNGSSLYLDGPFVGNDE+TNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

A0A6J1E155 pentatricopeptide repeat-containing protein At1g08610

6.9e-65

84.21

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLT QNY VT +GLHECSKQEYVST I QC +  EK S+LHLNCLCKSSCSSSYSCHWSA LG  RKLRVL  +GVQRSVCIDRVDDAY+DELALNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE+KVERN+FEQMTK +RLSSHNGSSLYLDGPFVGND ETNNEILQKFCNKG
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

A0A6J1HC71 pentatricopeptide repeat-containing protein At1g08610

1.6e-61

78.29

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Query:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG
        MAYTLTVQNYMVT+NGLHEC KQEYVSTG GQC +EKEK  S+HL+CLCKSSCSSSYS HWS T GFGRK RVL+ KG Q SVCIDRVDDAY+DEL LNG
Subjt:  MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNG

Query:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG
        HE++V RN  E+MTK +RLSSHNGSS+Y+DGPF+GNDEETNN ILQKFC  G
Subjt:  HELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKG

SwissProt top hits

e value

%identity

Alignment

Q9FRS4 Pentatricopeptide repeat-containing protein At1g08610

3.5e-05

33.66

Show/hide

Query:  SCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNGHELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNK
        SC    S  W   +G  +K    +  G+  SVCID V+D    E +   H   V  N+  ++   ++        L  DGP   NDEETNNEIL   C+ 
Subjt:  SCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNGHELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNK

Query:  G
        G
Subjt:  G

Arabidopsis top hits

e value

%identity

Alignment

AT1G08610.1 Pentatricopeptide repeat (PPR) superfamily protein

2.5e-06

33.66

Show/hide

Query:  SCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNGHELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNK
        SC    S  W   +G  +K    +  G+  SVCID V+D    E +   H   V  N+  ++   ++        L  DGP   NDEETNNEIL   C+ 
Subjt:  SCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNGHELKVERNVFEQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNK

Query:  G
        G
Subjt:  G

Sequences

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CDS sequence

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ATGGCGTATACATTGACGGTTCAGAATTATATGGTAACAGTTAATGGTCTGCATGAATGTTCCAAACAAGAGTATGTTAGTACTGGTATTGGCCAATGCTCGTTGGAAAA
AGAGAAATCATCTTCTTTACACTTAAATTGTTTGTGCAAGTCTAGTTGCAGTAGTTCATATAGCTGTCATTGGAGTGCAACTCTTGGTTTTGGAAGAAAACTACGAGTTT
TACAGTTGAAAGGAGTTCAGAGGAGTGTTTGCATCGATAGAGTTGATGATGCATATGAAGATGAATTGGCTTTGAACGGCCACGAGCTAAAGGTTGAGAGGAATGTTTTT
GAGCAAATGACTAAAACAAGGCGGCTCAGTTCTCATAATGGTTCGTCGTTGTATCTGGATGGGCCTTTTGTTGGAAATGATGAAGAAACCAACAATGAGATTCTACAGAA
ATTCTGCAACAAGGGAAGTTGA

mRNA sequence

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Protein sequence

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MAYTLTVQNYMVTVNGLHECSKQEYVSTGIGQCSLEKEKSSSLHLNCLCKSSCSSSYSCHWSATLGFGRKLRVLQLKGVQRSVCIDRVDDAYEDELALNGHELKVERNVF
EQMTKTRRLSSHNGSSLYLDGPFVGNDEETNNEILQKFCNKGS

Lag0035434 (gene) of Sponge gourd (AG-4) v1 genome