CuGenDBv2

Gene ID	Lag0035472
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr3:22225211..22232050
RNA-Seq Expression	Lag0035472
Synteny	Lag0035472
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.0e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCN EDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

4.0e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVD +NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

1.8e-30

85.06

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDSINN LHVPE PIT+ KAKK+QEAFTLHVQKL NAQ+E KNFEPKFLYNVSSASQEE+  KMA EKLC+LEDGTGDEKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

8.8e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGT +EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

8.0e-31

85.06

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.5e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCN EDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein

1.9e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVD +NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

8.6e-31

85.06

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDSINN LHVPE PIT+ KAKK+QEAFTLHVQKL NAQ+E KNFEPKFLYNVSSASQEE+  KMA EKLC+LEDGTGDEKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

A0A5D3BWE8 F15O4.13

4.3e-30

83.91

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGT +EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

A0A5D3DRJ1 F15O4.13

3.9e-31

85.06

Show/hide

Query:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL
        DDVDS+NN LHVPE PIT+ KAKK+QEAFTLHVQKLANAQ+E KNFE KFLYNVSSASQEE+  KMAREKLCNLEDGTG+EKSVQNL
Subjt:  DDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLCNLEDGTGDEKSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGGCCACTCTCGCCCATACTAATCAAAGGACAATCCCTCGTGTGAAGGAGTTCATGACACACTCAGGATTAAGACTAAGTTACCTAGGTCATCTTATTGAAACAGA
TACTCCCGCTCGCATATCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAAGCAGGTCGTATCACATAGTGTTACCAGGATAAGAGAGTCTTCGGTCT
TCAGACTTGGTGGAGTCTCTCTGAATTCTCTAGTTCTGTTGGAGAGCTTTGAAACTCTGAACTCTTGTTCTCACAAGTCCGTTCTAAGGCCAGAGGATAGTGGGGAAGAC
TTTAGCGATCGTTGTTGGGTTCCTAGAATGGTCTCCAATCTCTCCCTCTATTCGGCTCCCAAAGGTTACAATTTAGCTAGTGGTCATTATGATATTGATGAGGATGAGAG
TTACAACTCTTCAAATGACCATAGTTTAGATTGCATGTTGAGAATCATTCAAGCTTGGCTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGCTTCTTGCC
TTGAGATATTTGATCGACAAGGTTACAATTTAGCTAGTGGTCATTATGGTATTGATGAGGATGAGAGTTACAACTCTTCAAATGACCATAGTTTAGATTGCATGTTGAGA
ATCATTCAAGCTTGGCTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGCTTCTTGCCTTGAGATATTTGATCGACAAGGGACTATGGTAAAATTCAGATT
TGAAGATGATGTGGATTCAATCAATAATCCATTGCATGTACCTGAAGTACCAATCACAAGGAGCAAGGCAAAGAAGTTACAAGAGGCTTTCACATTGCATGTTCAAAAGC
TAGCAAATGCACAACAAGAGGCAAAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGTAGCCAAGATGGCACGGGAAAAGTTGTGT
AATTTGGAAGATGGCACGGGAGACGAAAAAAGTGTGCAGAATTTGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQATLAHTNQRTIPRVKEFMTHSGLRLSYLGHLIETDTPARISPTWTPWINTSVSNTKQVVSHSVTRIRESSVFRLGGVSLNSLVLLESFETLNSCSHKSVLRPEDSGED
FSDRCWVPRMVSNLSLYSAPKGYNLASGHYDIDEDESYNSSNDHSLDCMLRIIQAWLDQSCLWSDSNLKQASCLEIFDRQGYNLASGHYGIDEDESYNSSNDHSLDCMLR
IIQAWLDQSCLWSDSNLKQASCLEIFDRQGTMVKFRFEDDVDSINNPLHVPEVPITRSKAKKLQEAFTLHVQKLANAQQEAKNFEPKFLYNVSSASQEENVAKMAREKLC
NLEDGTGDEKSVQNL

Lag0035472 (gene) of Sponge gourd (AG-4) v1 genome