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Lag0035493 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035493
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr3:22693483..22693934
RNA-Seq ExpressionLag0035493
SyntenyLag0035493
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010682311.1 PREDICTED: uncharacterized protein LOC104897185 [Beta vulgaris subsp. vulgaris]5.9e-0535.14Show/hide
Query:  IGWGVVCRDSDGRIMGVVAIRVDVDYSSKMDELRAVIKGMDLVLSLGCRKVMVELECVRAVNLIQSKSESWMNF
        +G G VCRD  G ++G   ++  V +  ++ E RAV +G+ L  +LG RK++VE +C++ ++ ++SKS    +F
Subjt:  IGWGVVCRDSDGRIMGVVAIRVDVDYSSKMDELRAVIKGMDLVLSLGCRKVMVELECVRAVNLIQSKSESWMNF
XP_010686140.1 PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]3.4e-0535.9Show/hide
Query:  GWGVVCRDSDGRIMGVVAIRVDVDYSSKMDELRAVIKGMDLVLSLGCRKVMVELECVRAVNLI--QSKSESWMNFVAD
        G GVVCRD++G I+   A+++  ++ + + E RAV++G+ +  +LG +KV++E +C R V  +  Q K  S  N + D
Subjt:  GWGVVCRDSDGRIMGVVAIRVDVDYSSKMDELRAVIKGMDLVLSLGCRKVMVELECVRAVNLI--QSKSESWMNFVAD
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCGTACACTTGCGGTTAGCATTTTGCGCATCATCGATACTTCGTGTAATTCTGACCCGCCTGCGATTGGATGGGGGGTTGTCTGTAGAGATTCTGATGGAAGAAT
TATGGGTGTTGTTGCTATCAGGGTGGATGTCGATTATTCGTCAAAAATGGATGAGCTTCGGGCGGTGATTAAGGGTATGGACTTGGTCCTCTCTTTGGGATGTAGGAAGG
TCATGGTGGAATTGGAATGTGTTCGTGCGGTGAACTTAATTCAGAGCAAATCAGAGTCTTGGATGAATTTTGTGGCTGATGCTCAAGCTAAAAAAGCTAAGATGGCCCAA
GGTGGTGAGATTTGGGTCAATCAATTCCCAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCCGTACACTTGCGGTTAGCATTTTGCGCATCATCGATACTTCGTGTAATTCTGACCCGCCTGCGATTGGATGGGGGGTTGTCTGTAGAGATTCTGATGGAAGAAT
TATGGGTGTTGTTGCTATCAGGGTGGATGTCGATTATTCGTCAAAAATGGATGAGCTTCGGGCGGTGATTAAGGGTATGGACTTGGTCCTCTCTTTGGGATGTAGGAAGG
TCATGGTGGAATTGGAATGTGTTCGTGCGGTGAACTTAATTCAGAGCAAATCAGAGTCTTGGATGAATTTTGTGGCTGATGCTCAAGCTAAAAAAGCTAAGATGGCCCAA
GGTGGTGAGATTTGGGTCAATCAATTCCCAGAGTAG
Protein sequenceShow/hide protein sequence
MTRTLAVSILRIIDTSCNSDPPAIGWGVVCRDSDGRIMGVVAIRVDVDYSSKMDELRAVIKGMDLVLSLGCRKVMVELECVRAVNLIQSKSESWMNFVADAQAKKAKMAQ
GGEIWVNQFPE