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Lag0035511 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035511
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:23123228..23124010
RNA-Seq ExpressionLag0035511
SyntenyLag0035511
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019256.1 dbl4, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-1771.83Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S  S +   ++NRV PVLES+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

XP_022157931.1 uncharacterized protein LOC111024540 [Momordica charantia]1.4e-1773.61Show/hide
Query:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADTM DDDYLQ++++EQ S+LLAAKTL SDLDLAFQLQ+QEAMNASL S PS +PSPS NRV P LES+++
Subjt:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

XP_022964983.1 uncharacterized protein LOC111464930 [Cucurbita moschata]7.1e-1771.83Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S  S +   ++NRV PVLES+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

XP_023519052.1 uncharacterized protein LOC111782521 [Cucurbita pepo subsp. pepo]1.2e-1671.83Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAM+ASL S  S +   S+NRV PVLES+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

XP_038893965.1 uncharacterized protein LOC120082751 [Benincasa hispida]1.4e-1773.24Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADTMDDD +QD+IT+Q S+LL+AKTL SDLD AFQLQ+QEAMNASL S PS EPS SLN   PVL+S+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

TrEMBL top hitse value%identityAlignment
A0A1S3CJH8 uncharacterized protein LOC1035016651.6e-1468.06Show/hide
Query:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+ DDD +Q++IT+Q S+LL+AKTL SDLD AFQLQ+QEAM+ASL S+PSIE S SLN   PVL+S+ET
Subjt:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

A0A5A7U9A4 Putative E3 ubiquitin-protein ligase rbrA1.6e-1468.06Show/hide
Query:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+ DDD +Q++IT+Q S+LL+AKTL SDLD AFQLQ+QEAM+ASL S+PSIE S SLN   PVL+S+ET
Subjt:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

A0A6J1DZJ9 uncharacterized protein LOC1110245406.9e-1873.61Show/hide
Query:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADTM DDDYLQ++++EQ S+LLAAKTL SDLDLAFQLQ+QEAMNASL S PS +PSPS NRV P LES+++
Subjt:  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

A0A6J1HMI1 uncharacterized protein LOC1114649303.4e-1771.83Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S  S +   ++NRV PVLES+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

A0A6J1HZ17 uncharacterized protein LOC1114694062.5e-1567.61Show/hide
Query:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET
        MADT+DD+YL D+ITEQ S++LAAKTL+SDLD A+QLQ+QEAMNASL S  S +   ++NRV PVLES+ET
Subjt:  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCTGACCTCGATTTGGCCTTCCAACT
TCAAATACAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTCGATCGAACCATCTCCATCACTTAACAGGGTCGCCCCTGTCTTGGAGTCTAAAGAAACCGACCCTT
CTCATGTGGTGGGGGAGATGAAGAAGGGCAGCGACGGCGGTGACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGTGTTCGGAAATGTGGC
GATGTTGGCGTCAGTCACAGAAAATCTGACGGCGGGGAAGCTCTAGCGGCGGTGGGAGGAGGCTCCGACGATAGGGGAAGAAGAGGAGAGAATGTGAGGGAGAGATTAGG
GTTTCGGTTGGGGTGGGGGAGAAAGAGGAGAGAAGTTGATTTGTTTTTCTTTTTCTTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCTGACCTCGATTTGGCCTTCCAACT
TCAAATACAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTCGATCGAACCATCTCCATCACTTAACAGGGTCGCCCCTGTCTTGGAGTCTAAAGAAACCGACCCTT
CTCATGTGGTGGGGGAGATGAAGAAGGGCAGCGACGGCGGTGACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGTGTTCGGAAATGTGGC
GATGTTGGCGTCAGTCACAGAAAATCTGACGGCGGGGAAGCTCTAGCGGCGGTGGGAGGAGGCTCCGACGATAGGGGAAGAAGAGGAGAGAATGTGAGGGAGAGATTAGG
GTTTCGGTTGGGGTGGGGGAGAAAGAGGAGAGAAGTTGATTTGTTTTTCTTTTTCTTTTTTTAA
Protein sequenceShow/hide protein sequence
MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQIQEAMNASLKSMPSIEPSPSLNRVAPVLESKETDPSHVVGEMKKGSDGGDGLSSVRRGKERKGFGGGVRKCG
DVGVSHRKSDGGEALAAVGGGSDDRGRRGENVRERLGFRLGWGRKRREVDLFFFFFF