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Lag0035547 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035547
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr3:23865914..23866216
RNA-Seq ExpressionLag0035547
SyntenyLag0035547
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062552.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.9e-4788Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG SMHGCGKEALEL+S+MESHGVEPNDITFIS+FHACSHSGL+ EGKKHFNRMVH FGIVPK+EHY CLVDLLGRAGHL+EA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

KAE8653622.1 hypothetical protein Csa_007111 [Cucumis sativus]1.1e-4686Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWN MMAG SMHGCGKEALEL+S+MESHGVEPNDITF+S+FHACSHSGL+ EGKK+FN+MVHDFGIVPK+EHY CLVDLLGRAGHLDEA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

XP_008462708.1 PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis melo]3.0e-4788Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG SMHGCGKEALEL+S+MESHGVEPNDITFIS+FHACSHSGL+ EGKKHFNRMVH+FGIVPK+EHY CLVDLLGRAGHL+EA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

XP_011660280.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucumis sativus]1.1e-4686Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWN MMAG SMHGCGKEALEL+S+MESHGVEPNDITF+S+FHACSHSGL+ EGKK+FN+MVHDFGIVPK+EHY CLVDLLGRAGHLDEA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

XP_038879151.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida]6.7e-4788Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG SMHGCGKEALEL+S+ME +GVEPNDITFISVFHACSHSGL+ +GKKHFNRMVHDFGIVPKIEHY CLVDLLGRAGHLDEA+NII+NMPM+P
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

TrEMBL top hitse value%identityAlignment
A0A0A0LYC2 DYW_deaminase domain-containing protein5.5e-4786Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWN MMAG SMHGCGKEALEL+S+MESHGVEPNDITF+S+FHACSHSGL+ EGKK+FN+MVHDFGIVPK+EHY CLVDLLGRAGHLDEA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

A0A1S3CJ58 pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like1.5e-4788Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG SMHGCGKEALEL+S+MESHGVEPNDITFIS+FHACSHSGL+ EGKKHFNRMVH+FGIVPK+EHY CLVDLLGRAGHL+EA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

A0A5A7V2V9 Pentatricopeptide repeat-containing protein1.9e-4788Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG SMHGCGKEALEL+S+MESHGVEPNDITFIS+FHACSHSGL+ EGKKHFNRMVH FGIVPK+EHY CLVDLLGRAGHL+EA+NII+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

A0A6J1DQU9 pentatricopeptide repeat-containing protein At3g62890-like3.1e-4280Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAM+AG SMHG GKEALEL+S+MESHGVEPNDITFIS+FHACSHSG++ EGKKHF+RMVH +G+VPK+EHY CLVDLLGRAG+L EA+ IIQNMPM+P
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

A0A6J1JKG9 pentatricopeptide repeat-containing protein At4g21065-like6.3e-4383Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        MWNAMMAG S+HGCGKEALEL+S ME HGVEPNDITFISVFHACSHSGL+ EG KHF+RMVH+FGIVPKIEHY CLVDLLGRA  LD A++II+NMPMRP
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic6.1e-2749Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        +W+AM+ GL+MHGCG EA++++ KM+   V+PN +TF +VF ACSH+GL+ E +  F++M  ++GIVP+ +HY C+VD+LGR+G+L++A   I+ MP+ P
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

Q9CA54 Pentatricopeptide repeat-containing protein At1g746301.0e-2651.52Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        W +M+AGL+MHG G+EA+ L+++M ++GV P+ I+FIS+ HACSH+GL+ EG+ +F+ M   + I P+IEHY C+VDL GR+G L +AY+ I  MP+ P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

Q9LS72 Pentatricopeptide repeat-containing protein At3g292303.6e-2751.52Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        WN M+ GL +HG GKEA+EL+S+M   G+ P+ +TFI+V  +C+H+GL+ EG  +F  M   + +VP++EHY CLVDLLGR G L EA  ++Q MPM P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

Q9LUS3 Pentatricopeptide repeat-containing protein At3g166103.2e-2851Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVH-DFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        WN M+ G  +HG GKEAL L++ M+  GV P+++T +++  ACSHSGL+ EGK+ FN M   DF ++P+I+HY C+ DLL RAG+LDEAY+ +  MP  P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVH-DFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331708.0e-2754.64Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPM
        WNAM+ GL+ HG GKE L+L+ +M+S G++P+ +TFI V  ACSHSGL+ E  KH   M  D+GI P+IEHY CL D LGRAG + +A N+I++M M
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPM

Arabidopsis top hitse value%identityAlignment
AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.4e-2851.52Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        W +M+AGL+MHG G+EA+ L+++M ++GV P+ I+FIS+ HACSH+GL+ EG+ +F+ M   + I P+IEHY C+VDL GR+G L +AY+ I  MP+ P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.4e-2849Show/hide
Query:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        +W+AM+ GL+MHGCG EA++++ KM+   V+PN +TF +VF ACSH+GL+ E +  F++M  ++GIVP+ +HY C+VD+LGR+G+L++A   I+ MP+ P
Subjt:  MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein2.3e-2951Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVH-DFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        WN M+ G  +HG GKEAL L++ M+  GV P+++T +++  ACSHSGL+ EGK+ FN M   DF ++P+I+HY C+ DLL RAG+LDEAY+ +  MP  P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVH-DFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.6e-2851.52Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP
        WN M+ GL +HG GKEA+EL+S+M   G+ P+ +TFI+V  +C+H+GL+ EG  +F  M   + +VP++EHY CLVDLLGR G L EA  ++Q MPM P
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.7e-2854.64Show/hide
Query:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPM
        WNAM+ GL+ HG GKE L+L+ +M+S G++P+ +TFI V  ACSHSGL+ E  KH   M  D+GI P+IEHY CL D LGRAG + +A N+I++M M
Subjt:  WNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATGCAATGATGGCTGGATTGTCTATGCATGGTTGTGGAAAAGAAGCTTTAGAACTCTACTCAAAGATGGAGAGCCATGGTGTTGAACCCAATGATATCACATT
CATTTCAGTATTTCACGCTTGTAGTCATTCTGGATTGTTACCAGAAGGGAAGAAGCATTTCAACAGAATGGTTCATGACTTTGGAATTGTTCCAAAGATCGAGCACTATG
AATGCTTGGTGGATCTTCTCGGTCGAGCTGGACATCTCGACGAAGCTTACAACATCATTCAAAACATGCCCATGAGGCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATGCAATGATGGCTGGATTGTCTATGCATGGTTGTGGAAAAGAAGCTTTAGAACTCTACTCAAAGATGGAGAGCCATGGTGTTGAACCCAATGATATCACATT
CATTTCAGTATTTCACGCTTGTAGTCATTCTGGATTGTTACCAGAAGGGAAGAAGCATTTCAACAGAATGGTTCATGACTTTGGAATTGTTCCAAAGATCGAGCACTATG
AATGCTTGGTGGATCTTCTCGGTCGAGCTGGACATCTCGACGAAGCTTACAACATCATTCAAAACATGCCCATGAGGCCGTAA
Protein sequenceShow/hide protein sequence
MWNAMMAGLSMHGCGKEALELYSKMESHGVEPNDITFISVFHACSHSGLLPEGKKHFNRMVHDFGIVPKIEHYECLVDLLGRAGHLDEAYNIIQNMPMRP