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Lag0035553 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035553
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr3:23905270..23905856
RNA-Seq ExpressionLag0035553
SyntenyLag0035553
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063243.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-0647.27Show/hide
Query:  TITNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        T+ NL+AN++I  W + + KG +LKLD+EK FD ++ DF+D +L  K+F   WRK
Subjt:  TITNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

TYK17996.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0646.58Show/hide
Query:  NVLPSTI---------------TNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVW
        NVLPSTI                +L+A +L+ DW    +KGV++KL LEK FD VD DFLD IL AK FG ++
Subjt:  NVLPSTI---------------TNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVW

XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]1.4e-0537.18Show/hide
Query:  QLKNVLPSTITN---------------LIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        +LK  LP TI+                L+AN+ +  W + + KG +LKLD+EK FD ++ DF+D +L  K+F  +WRK
Subjt:  QLKNVLPSTITN---------------LIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

XP_022132189.1 uncharacterized protein LOC111005109 [Momordica charantia]1.3e-0948.05Show/hide
Query:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        +K++LP TIT               +LIAN++I DW+  ++KGV++KLD+EK FDKVD DFLD +L AK F   WRK
Subjt:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

XP_022145825.1 uncharacterized protein LOC111015185 [Momordica charantia]2.2e-0646.48Show/hide
Query:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDF
        +K++LP TI+               +LIAN+LI +W+  +KKG ++KLD+EK FDKVD DFLD +L AK F
Subjt:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDF

TrEMBL top hitse value%identityAlignment
A0A5D3CPM5 LINE-1 retrotransposable element ORF2 protein1.8e-0647.27Show/hide
Query:  TITNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        T+ NL+AN++I  W + + KG +LKLD+EK FD ++ DF+D +L  K+F   WRK
Subjt:  TITNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

A0A5D3D3Q8 Reverse transcriptase1.1e-0646.58Show/hide
Query:  NVLPSTI---------------TNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVW
        NVLPSTI                +L+A +L+ DW    +KGV++KL LEK FD VD DFLD IL AK FG ++
Subjt:  NVLPSTI---------------TNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVW

A0A6J1BSD3 uncharacterized protein LOC1110051096.1e-1048.05Show/hide
Query:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        +K++LP TIT               +LIAN++I DW+  ++KGV++KLD+EK FDKVD DFLD +L AK F   WRK
Subjt:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

A0A6J1CVL8 uncharacterized protein LOC1110151851.1e-0646.48Show/hide
Query:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDF
        +K++LP TI+               +LIAN+LI +W+  +KKG ++KLD+EK FDKVD DFLD +L AK F
Subjt:  LKNVLPSTIT---------------NLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDF

A0A803QI00 Uncharacterized protein1.1e-0654.9Show/hide
Query:  LIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK
        LIAN+ + D+    KKG + K+DLEK +D+VD DFLD +L  K FG VWRK
Subjt:  LIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGCAGAATTCCTTGGCTTCTATCGAGGCACTAGATTCCTATCGACCAATGTTGATTGGTGTCCAATTGAAAAATGTGCTGCCATCAACTATTACTAACTTGAT
TGCAAACAAGTTGATTGGTGACTGGAATATCTCTCGTAAGAAAGGTGTTATGCTTAAGCTGGATTTAGAAAAGACGTTTGATAAAGTTGATGAGGACTTCTTGGATGCAA
TTCTTCATGCCAAAGACTTTGGAACAGTCTGGAGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGCAGAATTCCTTGGCTTCTATCGAGGCACTAGATTCCTATCGACCAATGTTGATTGGTGTCCAATTGAAAAATGTGCTGCCATCAACTATTACTAACTTGAT
TGCAAACAAGTTGATTGGTGACTGGAATATCTCTCGTAAGAAAGGTGTTATGCTTAAGCTGGATTTAGAAAAGACGTTTGATAAAGTTGATGAGGACTTCTTGGATGCAA
TTCTTCATGCCAAAGACTTTGGAACAGTCTGGAGGAAATGA
Protein sequenceShow/hide protein sequence
MLRQNSLASIEALDSYRPMLIGVQLKNVLPSTITNLIANKLIGDWNISRKKGVMLKLDLEKTFDKVDEDFLDAILHAKDFGTVWRK