CuGenDBv2

Gene ID	Lag0035559
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Genome location	chr3:23984435..23985067
RNA-Seq Expression	Lag0035559
Synteny	Lag0035559
Gene Ontology terms	GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008906 - HAT, C-terminal dimerisation domain IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040447.1 transposase [Cucumis melo var. makuwa]

1.3e-28

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

KAA0048472.1 transposase [Cucumis melo var. makuwa]

4.4e-29

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRVI
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  N I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

TYK28895.1 putative transposase [Cucumis melo var. makuwa]

1.3e-28

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

XP_038877573.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]

1.9e-32

52.78

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Query:  STAKTSNLFRFQHVDMEDDDDDFDVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTV
        ++A    +F F   D+ D+DD   VD+EVD+YLLE R K + NFD+L+WWK NSSRYK+L K+ARD+LA+P+STVA ES F+T G+VIDPFR++L+P+ V
Subjt:  STAKTSNLFRFQHVDMEDDDDDFDVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTV

Query:  AALICVQNWLRFNAINVDLLSHLEEVSLFEEDFKPCTNEASKRQ
         AL+C QN LR   I++ L  +LEE+   EE F    NEA+  Q
Subjt:  AALICVQNWLRFNAINVDLLSHLEEVSLFEEDFKPCTNEASKRQ

XP_038890289.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]

6.2e-31

60.53

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Query:  DDDDDFDVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWLRFNAINV
        D+DD   VD+EVD+YLLE R K + NFDIL+WWK NSSRYK+  K+ARD+LA+PVS VASESVF+T  RVIDPFR++L+P+T+ +L+C QNWLR   I++
Subjt:  DDDDDFDVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWLRFNAINV

Query:  DLLSHLEEVSLFEE
         L  +LEE+   EE
Subjt:  DLLSHLEEVSLFEE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFW0 Transposase

6.2e-29

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

A0A5D3CXI1 Zinc finger BED domain-containing protein RICESLEEPER 3-like

1.1e-28

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

A0A5D3DAN8 Zinc finger BED domain-containing protein RICESLEEPER 3-like

1.1e-28

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

A0A5D3DXX1 Transposase

2.1e-29

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRVI
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  N I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

A0A5D3DZY7 Putative transposase

6.2e-29

48.63

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Query:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI
        +  +I  DS       F +  +  E +DD         +E+D+YLLE   + + +FDIL+WWK+NS R++VLG++ARD+LAIPVSTVASES FST GRV+
Subjt:  MSQSICIDSTAKTSNLFRFQHVDMEDDDDDF----DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVI

Query:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK
        D  R +LAP TV ALIC QNWL  + I++     LEE S FEE F+
Subjt:  DPFRSTLAPSTVAALICVQNWLRFNAINVDLLSHLEEVSLFEEDFK

SwissProt top hits

e value

%identity

Alignment

B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 1

1.9e-14

44.94

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Query:  TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVAS-ESVFS--TSGRVIDPFRSTLAPSTVAALICVQNWLRF
        +E++ YL E        FDIL WWK+N+ +Y  L K+ARD+LAIP+S V+S  S+FS  T  R++D +RS+  P  V AL+C ++WL++
Subjt:  TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVAS-ESVFS--TSGRVIDPFRSTLAPSTVAALICVQNWLRF

P03010 Putative AC9 transposase

2.1e-18

43.41

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Query:  SICIDSTAKTSNLFRFQHVD--MEDDDDDF--------DVD----TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVF
        S C  S  KT         D  ME++DD+F        D D     E+D Y+ E   K    FDIL WW+   + Y +L ++ARDVLAI VSTVASES F
Subjt:  SICIDSTAKTSNLFRFQHVD--MEDDDDDF--------DVD----TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVF

Query:  STSGRVIDPFRSTLAPSTVAALICVQNWL
        S  GRV+DP+R+ L    V ALIC ++W+
Subjt:  STSGRVIDPFRSTLAPSTVAALICVQNWL

P08770 Putative AC transposase

2.1e-18

43.41

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Query:  SICIDSTAKTSNLFRFQHVD--MEDDDDDF--------DVD----TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVF
        S C  S  KT         D  ME++DD+F        D D     E+D Y+ E   K    FDIL WW+   + Y +L ++ARDVLAI VSTVASES F
Subjt:  SICIDSTAKTSNLFRFQHVD--MEDDDDDF--------DVD----TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVF

Query:  STSGRVIDPFRSTLAPSTVAALICVQNWL
        S  GRV+DP+R+ L    V ALIC ++W+
Subjt:  STSGRVIDPFRSTLAPSTVAALICVQNWL

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 3

4.9e-15

45.56

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Query:  TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVAS-ESVFS---TSGRVIDPFRSTLAPSTVAALICVQNWLRF
        +E++ YL E       +F+ILEWWK+N+ ++  L K+ARDVLAIP+S V+S  S+FS   T  +++D +RS+L P TV AL C ++WL++
Subjt:  TEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVAS-ESVFS---TSGRVIDPFRSTLAPSTVAALICVQNWLRF

Q9M2N5 Zinc finger BED domain-containing protein DAYSLEEPER

1.1e-14

43.68

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Query:  DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL
        ++ +E+D YL E        FD+L+WWK N  +Y  L K+ARD+L+IPVS  A + VF    R +D ++++L P TV ALIC + WL
Subjt:  DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL

Arabidopsis top hits

e value

%identity

Alignment

AT1G18560.1 BED zinc finger ;hAT family dimerisation domain

6.4e-10

37.88

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Query:  DILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL
        D+L+WWKVNS RY  L  +ARD LA+  ++ A E +F   G  ID  +  +   +  ++IC+++W+
Subjt:  DILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL

AT3G42170.1 BED zinc finger ;hAT family dimerisation domain

7.8e-16

43.68

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Query:  DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL
        ++ +E+D YL E        FD+L+WWK N  +Y  L K+ARD+L+IPVS  A + VF    R +D ++++L P TV ALIC + WL
Subjt:  DVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAALICVQNWL

Sequences

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CDS sequence

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ATGAGTCAATCTATTTGTATTGATTCTACTGCTAAAACAAGTAATCTTTTTCGCTTTCAACATGTTGATATGGAAGATGATGATGATGATTTTGATGTGGACACAGAGGT
TGATGTTTATTTATTAGAACGTCGTGCAAAAGATGATGCAAACTTTGATATCTTGGAATGGTGGAAAGTAAATTCTTCTAGGTACAAGGTTCTTGGTAAGGTGGCACGAG
ATGTTTTGGCAATTCCAGTGTCTACGGTTGCTTCTGAGTCTGTATTTAGTACTAGTGGAAGGGTAATTGATCCTTTTCGTTCCACTTTGGCTCCATCTACAGTTGCAGCA
CTTATTTGTGTACAAAATTGGCTACGTTTTAATGCTATCAATGTTGATCTTTTATCACATTTGGAGGAAGTTTCACTCTTTGAAGAAGATTTTAAACCATGTACAAATGA
AGCATCTAAAAGACAATTAGCAAAGGAGTGA

mRNA sequence

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Protein sequence

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MSQSICIDSTAKTSNLFRFQHVDMEDDDDDFDVDTEVDVYLLERRAKDDANFDILEWWKVNSSRYKVLGKVARDVLAIPVSTVASESVFSTSGRVIDPFRSTLAPSTVAA
LICVQNWLRFNAINVDLLSHLEEVSLFEEDFKPCTNEASKRQLAKE

Lag0035559 (gene) of Sponge gourd (AG-4) v1 genome