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Lag0035580 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035580
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:24528560..24528982
RNA-Seq ExpressionLag0035580
SyntenyLag0035580
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4378452.1 hypothetical protein F8388_021646 [Cannabis sativa]7.0e-1835.25Show/hide
Query:  WWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFLE-CPEQDL
        WW K WKLQ+PSK+++FVWK FHN +P    L   H+  +  CP+C+ + E+  HALF C RA  +W I   +L          ++  +   E     + 
Subjt:  WWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFLE-CPEQDL

Query:  ERICVGAWAIWNDRNSMVHNRP
        E+     W+IW +RN+  H++P
Subjt:  ERICVGAWAIWNDRNSMVHNRP

XP_030510081.1 uncharacterized protein LOC115724856 [Cannabis sativa]3.1e-1836.96Show/hide
Query:  MQSNYVVSLSNEGREKKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRD
        + S  V S S+    + WW+KLW L VP K+K F WK+FH+ +P  +NL    +  +  C IC    ES  HAL  C RA TIW           + + D
Subjt:  MQSNYVVSLSNEGREKKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRD

Query:  IKDRWMDFL-ECPEQDLERICVGAWAIWNDRNSMVHNR
        IK+ ++  L   P+QD        W IWN RNS++ N+
Subjt:  IKDRWMDFL-ECPEQDLERICVGAWAIWNDRNSMVHNR

XP_030941730.1 uncharacterized protein LOC115966692 [Quercus lobata]1.4e-1836.64Show/hide
Query:  SNEGREKKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFL
        S  G +   W KLWKL +P+K+KVF W++FHN +PT  NL   HV  +  C +C  + E+  HAL++C  A  +W      L +   GQ D+     + L
Subjt:  SNEGREKKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFL

Query:  E-CPEQDLERICVGAWAIWNDRNSMVHNRPI
        +   +++ E   V AW +WN RNS+ H   I
Subjt:  E-CPEQDLERICVGAWAIWNDRNSMVHNRPI

XP_030958760.1 uncharacterized protein LOC115980671 [Quercus lobata]7.0e-1834.25Show/hide
Query:  MQSNYVVSL-----SNEGRE------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHP
        ++S Y V+L     SNEG        ++ W+K+W L +PSK+K+F W++  +++PTMVNL+   +  NG CP C  E E+  H++ +C  A  +WD    
Subjt:  MQSNYVVSL-----SNEGRE------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHP

Query:  SLTQDQWGQRDIKDRWMDFLECPE-QDLERICVGAWAIWNDRNSMV
         L +D     D+ D     ++    +DLE     AW+IW +RN +V
Subjt:  SLTQDQWGQRDIKDRWMDFLECPE-QDLERICVGAWAIWNDRNSMV

XP_030970961.1 uncharacterized protein LOC115991405 [Quercus lobata]7.0e-1834.25Show/hide
Query:  MQSNYVVSL-----SNEGRE------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHP
        ++S Y V+L     SNEG        ++ W+K+W L +PSK+K+F W++  +++PTMVNL+   +  NG CP C  E E+  H++ +C  A  +WD    
Subjt:  MQSNYVVSL-----SNEGRE------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHP

Query:  SLTQDQWGQRDIKDRWMDFLECPE-QDLERICVGAWAIWNDRNSMV
         L +D     D+ D     ++    +DLE     AW+IW +RN +V
Subjt:  SLTQDQWGQRDIKDRWMDFLECPE-QDLERICVGAWAIWNDRNSMV

TrEMBL top hitse value%identityAlignment
A0A2N9F050 zf-RVT domain-containing protein4.0e-1937.7Show/hide
Query:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQ--DQWGQRDIKDRWMDFLECPE
        +W W K+WKL +P K+K F+W+++H ++PT   L   ++  + LC IC +++E+T HA++QC  A   W +IH  L +  +Q G+     +W+ F   P+
Subjt:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQ--DQWGQRDIKDRWMDFLECPE

Query:  QDLERICVGAWAIWNDRNSMVH
        +++E   V AW+IWN RN  VH
Subjt:  QDLERICVGAWAIWNDRNSMVH

A0A2N9GM55 Uncharacterized protein4.0e-1939.83Show/hide
Query:  WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPEQDL
        W K+WKL +P K+K F+W+++H+S+PT  NL    +  N LC IC +E+EST HAL++C  A   W ++ P   Q    Q D   R+M   F    ++DL
Subjt:  WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPEQDL

Query:  ERICVGAWAIWNDRNSMV
        E   + +WAIW+ RN  +
Subjt:  ERICVGAWAIWNDRNSMV

A0A2N9HJA4 zf-RVT domain-containing protein4.0e-1941.32Show/hide
Query:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPE
        +W W K+WKL++P K+K F+W+++H+S+PT +NL    +  N LC IC +E+EST HAL+QC  A   W ++ P   Q    Q D   R+M   F    +
Subjt:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPE

Query:  QDLERICVGAWAIWNDRNSMV
         +LE   V AWAIW+ RN  +
Subjt:  QDLERICVGAWAIWNDRNSMV

A0A2N9HWG1 Reverse transcriptase domain-containing protein4.0e-1941.32Show/hide
Query:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPE
        +W W K+WKL++P K+K F+W+++H+S+PT +NL    +  N LC IC +E+EST HAL+QC  A   W ++ P   Q    Q D   R+M   F    +
Subjt:  KW-WEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWM--DFLECPE

Query:  QDLERICVGAWAIWNDRNSMV
         +LE   V AWAIW+ RN  +
Subjt:  QDLERICVGAWAIWNDRNSMV

A0A803QH76 Uncharacterized protein4.0e-1934Show/hide
Query:  MQSNYVVSLSNEGRE--------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLT
        +QS Y +++S + R+        +KWW +LW LQ+P KVK+F W+  ++++PT VNL    +  +  C +C+   ES  HALF+CHRA  +WD  H ++ 
Subjt:  MQSNYVVSLSNEGRE--------KKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLT

Query:  QDQWGQRDIKDRWMDFLEC-PEQDLERICVGAWAIWNDRNSMVH-NRPIP
                  D +        + DLE I    W IW++RN  +H  +P P
Subjt:  QDQWGQRDIKDRWMDFLEC-PEQDLERICVGAWAIWNDRNSMVH-NRPIP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.9e-0531.94Show/hide
Query:  LWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQ
        LWK++VP +VK F+W   + +V T       H+  + +C +C+   ES  H L  C     IW  + P   Q
Subjt:  LWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQ

Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein7.0e-0828.21Show/hide
Query:  EKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWG
        + +WKL V  K+K F+W+    ++ T   LR  ++  + +C  C  E+E+  H +F C    ++W   +  +  +QWG
Subjt:  EKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWG

AT3G09510.1 Ribonuclease H-like superfamily protein5.5e-1328.46Show/hide
Query:  KLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFL----ECPEQDL
        ++W L +  K+K F+W++   ++ T   L    + ++  CP C  E+ES +HALF C  AT  W +   SL ++Q    D ++   + L    +    D 
Subjt:  KLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFL----ECPEQDL

Query:  ERICVG--AWAIWNDRNSMVHNR
         ++      W IW  RN++V N+
Subjt:  ERICVG--AWAIWNDRNSMVHNR

AT3G25270.1 Ribonuclease H-like superfamily protein9.8e-1028.57Show/hide
Query:  KLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIW---DIIHPSL-TQDQWGQRDIKDRWMDFLECPEQDL
        K+WKL+   K+K F+WK    ++ T  NL+  H+  +  C  C +EDE++ H  F C  A  +W    I H  L T     +  ++      L   +  L
Subjt:  KLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIW---DIIHPSL-TQDQWGQRDIKDRWMDFLECPEQDL

Query:  ERICVG-AWAIWNDRNSMV
          + +   W +W  RN +V
Subjt:  ERICVG-AWAIWNDRNSMV

AT4G10613.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-0624.3Show/hide
Query:  VWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQD--QWGQRDIKDRWMDFLECPEQDLERICVG---AWAIWND
        +W S  + +PT   L    + ++ LC +C +  E+ DH +  C  +++IW+++   L     Q+   +    W+         + R  V      AIW  
Subjt:  VWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQD--QWGQRDIKDRWMDFLECPEQDLERICVG---AWAIWND

Query:  RNSMVHN
        RN+++HN
Subjt:  RNSMVHN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGAACTATGTGGTTTCTTTGTCAAATGAGGGTCGAGAGAAGAAGTGGTGGGAAAAATTATGGAAGCTCCAAGTGCCATCTAAGGTCAAAGTTTTTGTATGGAA
ATCTTTCCATAACTCTGTTCCTACGATGGTCAATCTTCGGGGCCATCATGTTCCAGTTAATGGATTATGTCCTATTTGTCAGGAGGAGGATGAAAGTACAGACCATGCTT
TGTTTCAATGTCATCGGGCTACAACAATTTGGGATATAATTCATCCCTCGTTAACCCAGGATCAATGGGGTCAACGGGATATAAAAGATCGATGGATGGATTTCTTAGAG
TGTCCGGAGCAGGATCTTGAGCGTATATGTGTGGGGGCTTGGGCAATTTGGAATGATCGGAATAGTATGGTCCATAATCGACCAATTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGAACTATGTGGTTTCTTTGTCAAATGAGGGTCGAGAGAAGAAGTGGTGGGAAAAATTATGGAAGCTCCAAGTGCCATCTAAGGTCAAAGTTTTTGTATGGAA
ATCTTTCCATAACTCTGTTCCTACGATGGTCAATCTTCGGGGCCATCATGTTCCAGTTAATGGATTATGTCCTATTTGTCAGGAGGAGGATGAAAGTACAGACCATGCTT
TGTTTCAATGTCATCGGGCTACAACAATTTGGGATATAATTCATCCCTCGTTAACCCAGGATCAATGGGGTCAACGGGATATAAAAGATCGATGGATGGATTTCTTAGAG
TGTCCGGAGCAGGATCTTGAGCGTATATGTGTGGGGGCTTGGGCAATTTGGAATGATCGGAATAGTATGGTCCATAATCGACCAATTCCTTGA
Protein sequenceShow/hide protein sequence
MQSNYVVSLSNEGREKKWWEKLWKLQVPSKVKVFVWKSFHNSVPTMVNLRGHHVPVNGLCPICQEEDESTDHALFQCHRATTIWDIIHPSLTQDQWGQRDIKDRWMDFLE
CPEQDLERICVGAWAIWNDRNSMVHNRPIP