CuGenDBv2

Gene ID	Lag0035605
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr3:25145394..25147915
RNA-Seq Expression	Lag0035605
Synteny	Lag0035605
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039044.1 gag/pol protein [Cucumis melo var. makuwa]

2.6e-25

56.67

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  PETPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L  GA+
Subjt:  GKDLRKSTSASMVNLYEGAI

KAA0051499.1 gag/pol protein [Cucumis melo var. makuwa]

6.2e-27

52.76

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        +HG+ LFKK  P+TPQEV +MR +P                    YAVG+ S+YQSNP   HW +VK  LKYLRR R+YMLVYG+KD ILTRYTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAISFALNRK
        G+D RKSTS S+  L EGA+ +  N++
Subjt:  GKDLRKSTSASMVNLYEGAISFALNRK

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

8.9e-26

56.67

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  P+TPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R+YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L EGA+
Subjt:  GKDLRKSTSASMVNLYEGAI

KAA0064276.1 gag/pol protein [Cucumis melo var. makuwa]

9.8e-25

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  P+TPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR ++YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L  GA+
Subjt:  GKDLRKSTSASMVNLYEGAI

TYJ99758.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-26

57.5

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  PETPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L EGA+
Subjt:  GKDLRKSTSASMVNLYEGAI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6C7 Gag/pol protein

1.3e-25

56.67

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  PETPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L  GA+
Subjt:  GKDLRKSTSASMVNLYEGAI

A0A5A7UDH2 Gag/pol protein

3.0e-27

52.76

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        +HG+ LFKK  P+TPQEV +MR +P                    YAVG+ S+YQSNP   HW +VK  LKYLRR R+YMLVYG+KD ILTRYTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAISFALNRK
        G+D RKSTS S+  L EGA+ +  N++
Subjt:  GKDLRKSTSASMVNLYEGAISFALNRK

A0A5A7V1F5 Gag/pol protein

4.3e-26

56.67

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  P+TPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R+YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L EGA+
Subjt:  GKDLRKSTSASMVNLYEGAI

A0A5A7VD16 Gag/pol protein

4.8e-25

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  P+TPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR ++YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L  GA+
Subjt:  GKDLRKSTSASMVNLYEGAI

A0A5D3BNP0 Gag/pol protein

1.9e-26

57.5

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Query:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT
        RHG+ L K+  PETPQEVEDMRR+P                    YAVG+ S+YQSNP   HW TVK  LKYLRR R YMLVYG KD ILT YTD+DF+T
Subjt:  RHGILLFKKLIPETPQEVEDMRRMP--------------------YAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKT

Query:  GKDLRKSTSASMVNLYEGAI
         KD RKSTS S+  L EGA+
Subjt:  GKDLRKSTSASMVNLYEGAI

SwissProt top hits

e value

%identity

Alignment

P0CV72 Secreted RxLR effector protein 161

1.2e-04

35.23

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Query:  AVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVY---GTKDFILTRYTDTDFKTGKDLRKSTSASMVNLYEGAISFALNRKQKEV
        AVGV S++ S+P   HW+ +K  L+YL+  + Y L +   GT    L  Y+D D+    + R+STS  +  L  G +S+  ++KQ+ V
Subjt:  AVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVY---GTKDFILTRYTDTDFKTGKDLRKSTSASMVNLYEGAISFALNRKQKEV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-08

31.51

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Query:  LFKKLIPETPQEVEDMRRMPY--------------------AVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKTGKDLR
        L KK+ P T +E  +M ++PY                    AVGV S++  NP   HW+ VK  L+YLR      L +G  D IL  YTD D     D R
Subjt:  LFKKLIPETPQEVEDMRRMPY--------------------AVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKTGKDLR

Query:  KSTSASMVNLYEGAISFALNRKQKEVVAIQISQFSIDAKYDDVEEL
        KS++  +     GAIS+    K ++ VA+  ++    A  +  +E+
Subjt:  KSTSASMVNLYEGAISFALNRKQKEVVAIQISQFSIDAKYDDVEEL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGTCATAATCTTGAGAAGAGCATCTACATGTCTCAACCAGAAGAGTTCATACAACAAGATCAAGAGCAAAAGACATGGAATTCTTTTGTTTAAGAAACTTATTCC
TGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAGTAGGGGTTGCAAGTAAGTATCAATCTAATCCAAGATTTTGTCATTGGAAAACTGTTAAGAATA
CCCTCAAGTATCTTAGGAGAATGAGGAACTATATGCTCGTGTACGGGACTAAGGATTTCATCCTTACAAGATACACTGACACGGATTTTAAGACTGGTAAGGATTTGAGG
AAATCTACATCAGCATCTATGGTCAATCTTTACGAAGGAGCTATATCTTTCGCTCTAAACAGAAAGCAAAAGGAAGTTGTTGCTATTCAAATTTCACAGTTTTCAATTGA
TGCAAAATATGACGATGTTGAAGAATTGCCGAGACGAAACTATAAAGTAGAAAACACTTCTGAAGATGGAACTCCTTGTCGGTTGGCATTTGGATCTATTGACAACATTG
TCGCATGTGGGACAATATTTGATTCAAGTATAAAAGTTTATAATGTAAAGGTTTCAATTGATGTAGTGGTGGATGGAAATTGTTCTCTTCCCATACCATCGAATGAAGGA
GAAAACTTACTCTCCCAAGAGTTAGGTTCGCATCTATTATAG

mRNA sequence

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Protein sequence

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MDVIILRRASTCLNQKSSYNKIKSKRHGILLFKKLIPETPQEVEDMRRMPYAVGVASKYQSNPRFCHWKTVKNTLKYLRRMRNYMLVYGTKDFILTRYTDTDFKTGKDLR
KSTSASMVNLYEGAISFALNRKQKEVVAIQISQFSIDAKYDDVEELPRRNYKVENTSEDGTPCRLAFGSIDNIVACGTIFDSSIKVYNVKVSIDVVVDGNCSLPIPSNEG
ENLLSQELGSHLL

Lag0035605 (gene) of Sponge gourd (AG-4) v1 genome