; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035618 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035618
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr3:25588772..25591332
RNA-Seq ExpressionLag0035618
SyntenyLag0035618
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.3e-1561.9Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        MST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M + + K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.2e-1562.65Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]8.2e-1562.65Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1460.71Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        MST TR SAF+RLS+S SKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSR+KRK S+ INTEGSL  K
Subjt:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-1461.45Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ + +PSRMKRK SV INTEGSL  K
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein3.0e-1561.9Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        MST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M + + K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

A0A5A7TGM1 Retrotransposon gag protein8.8e-1563.75Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSL
        ST TR SAF+ LS+STSKK RPSTS FDRLK+ +DQ +R+M +L+VK + E + D K+ S +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein4.0e-1562.65Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

A0A5A7U974 Retrotransposon gag protein6.8e-1560.71Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        MST TR SAF+RLS+S SKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSR+KRK S+ INTEGSL  K
Subjt:  MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

A0A5D3BBF9 Gag protease polyprotein4.0e-1562.65Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK
        ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K + E + D K+ S +PSRMKRK SV INTEGSL  K
Subjt:  STSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCA
ACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTACGATGAAGTAAGCAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTC
TCATAAATACAGAAGGTTCCTTGAAGTCGAAGGTTCTCACGTGCTTTTGCGAGTTCGAAGGTTCTCACGCACTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTC
ACGCGTTTCGCTGCAGTTCATTCTCTCCAAGTTCAAAGGTTCTTAAGTTGTACGCTACTGCGTTGTTCCTTTTCCAAGTTCGAAGGTTCTCGGCTTTTGCTCCTGTGTTG
CTCCTTCTCCAAGTCTAAAGGTTTGCACGTGTTGTTATGCTGCTTCGCTGCTGTTCCTTCTCCAAAGTTCGAAGGTTCCCACGTTGCGCGGTTGTGCTGCTTCCTTCTCC
AAGTTCGAAGTTCCTTCTCCAAGTTCAAAGGTTCACGTGGTGATGTTTTGTTGTTCCTCCCCAAGTTCGAAGATTCTGACGCTGCACTGCTCCCTTCTCCAAGTTCGAAG
GTTCTGACATTGCACCGTTGCGCTGCTTCCTTCACCGAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTTGCTGCAGTTCCTTC
CTCCAAGTCCGAAGGTTCTCACGCGCTTTGCTGTAGTTCCTTCCTCCAAGTCCGAAGGTTCTCAAGCGCTTCGCTGCAGTTCCCTCTCCCGAAATTTGAAGGTTCTCACG
CGCAGTTCCTCCTTCCTCAAAAGTCGCACTTTGCTGCAATTCCTTCCTCAAAGTTCGAATGTTCTCTCACGCGCTTCGCTGCAATTCCCTCTCCAGAAATTAAGTTCCCT
CTCCCGAAATTTGAAGGTTCTCACGCGCAGTTCCTCCTTTCTCAAAAGTCGCGCTTTGCTGCAATTCCTTCCTCAAAGTTCGAATGTTCTCTCACGCGCTTCGCTGCAGT
TCCCTCTCCAGAAATTAAGGTTCTCTCTCACGCGCTTCACTTCAGTTCCTTCCTCCAAGTCCGAAGGTTCTCACGCGCAGTTCCTCCTTCCTCAAAGTCGCGCTTTGTTG
CTGCAATTCCTTCCTCACGCGCTTACGCTGCAGTTTCGTCCTCCAAGTCCGAAGGTTCTCACGCGCTTACGTTGCAGTTCCTTCCCCACAAGTCCGAAGGTGGTGAAATC
ACTGCAAGAGAAGTTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCA
ACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTACGATGAAGTAAGCAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTC
TCATAAATACAGAAGGTTCCTTGAAGTCGAAGGTTCTCACGTGCTTTTGCGAGTTCGAAGGTTCTCACGCACTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTC
ACGCGTTTCGCTGCAGTTCATTCTCTCCAAGTTCAAAGGTTCTTAAGTTGTACGCTACTGCGTTGTTCCTTTTCCAAGTTCGAAGGTTCTCGGCTTTTGCTCCTGTGTTG
CTCCTTCTCCAAGTCTAAAGGTTTGCACGTGTTGTTATGCTGCTTCGCTGCTGTTCCTTCTCCAAAGTTCGAAGGTTCCCACGTTGCGCGGTTGTGCTGCTTCCTTCTCC
AAGTTCGAAGTTCCTTCTCCAAGTTCAAAGGTTCACGTGGTGATGTTTTGTTGTTCCTCCCCAAGTTCGAAGATTCTGACGCTGCACTGCTCCCTTCTCCAAGTTCGAAG
GTTCTGACATTGCACCGTTGCGCTGCTTCCTTCACCGAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTTGCTGCAGTTCCTTC
CTCCAAGTCCGAAGGTTCTCACGCGCTTTGCTGTAGTTCCTTCCTCCAAGTCCGAAGGTTCTCAAGCGCTTCGCTGCAGTTCCCTCTCCCGAAATTTGAAGGTTCTCACG
CGCAGTTCCTCCTTCCTCAAAAGTCGCACTTTGCTGCAATTCCTTCCTCAAAGTTCGAATGTTCTCTCACGCGCTTCGCTGCAATTCCCTCTCCAGAAATTAAGTTCCCT
CTCCCGAAATTTGAAGGTTCTCACGCGCAGTTCCTCCTTTCTCAAAAGTCGCGCTTTGCTGCAATTCCTTCCTCAAAGTTCGAATGTTCTCTCACGCGCTTCGCTGCAGT
TCCCTCTCCAGAAATTAAGGTTCTCTCTCACGCGCTTCACTTCAGTTCCTTCCTCCAAGTCCGAAGGTTCTCACGCGCAGTTCCTCCTTCCTCAAAGTCGCGCTTTGTTG
CTGCAATTCCTTCCTCACGCGCTTACGCTGCAGTTTCGTCCTCCAAGTCCGAAGGTTCTCACGCGCTTACGTTGCAGTTCCTTCCCCACAAGTCCGAAGGTGGTGAAATC
ACTGCAAGAGAAGTTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLYDEVSSDKKLQSSIPSRMKRKFSVLINTEGSLKSKVLTCFCEFEGSHALRWSSFSPSSKVL
TRFAAVHSLQVQRFLSCTLLRCSFSKFEGSRLLLLCCSFSKSKGLHVLLCCFAAVPSPKFEGSHVARLCCFLLQVRSSFSKFKGSRGDVLLFLPKFEDSDAALLPSPSSK
VLTLHRCAASFTEFKGSHALRCSSFLQVRRFFAAVPSSKSEGSHALCCSSFLQVRRFSSASLQFPLPKFEGSHAQFLLPQKSHFAAIPSSKFECSLTRFAAIPSPEIKFP
LPKFEGSHAQFLLSQKSRFAAIPSSKFECSLTRFAAVPSPEIKVLSHALHFSSFLQVRRFSRAVPPSSKSRFVAAIPSSRAYAAVSSSKSEGSHALTLQFLPHKSEGGEI
TAREVDDDRGDHPCRKLQSSK