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Lag0035622 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035622
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:25747129..25747548
RNA-Seq ExpressionLag0035622
SyntenyLag0035622
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ29705.1 putative RNA-directed DNA polymerase [Rosa chinensis]4.2e-2345.19Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +N +KS V +SKNV  +T+ +L+  L + +V+S   YLGLP        STFQ    R+ + LQ W+G   S  GKDILI+ V Q +PTYA+SCF +
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
         K         CA+F WGSS   RK+HWK W+ LC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

XP_010684764.1 PREDICTED: uncharacterized protein LOC104899297 [Beta vulgaris subsp. vulgaris]3.2e-2345.93Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +NL K+ V +SKNV  D +  +   L +R VD    YLGLP        + F C   R+ K LQGWK    S  GK+I+IK+V Q IPTY +S F I
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        P  +L +  SL A+F WGS+   RK+HW +WEDLC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

XP_010690177.1 PREDICTED: uncharacterized protein LOC104903764 [Beta vulgaris subsp. vulgaris]1.1e-2345.93Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +NL K+ V +S NVP + +  +   L +R VD    YLGLP        + F C   R+ K LQGWK    S  GK+I+IK+V Q IPTY +S F I
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        P  ++ +  SL A+F WGS+G  RK+HW KWEDLC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

XP_010696345.1 PREDICTED: uncharacterized protein LOC104908875 [Beta vulgaris subsp. vulgaris]3.8e-2445.93Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +NL K+ V +S+NV  D +  + +VL ++ VD    YLGLP+        TF C   R+ K LQGWK    S  GK+ILIKSV Q IPTY +S F +
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQC-GNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        P  +L +  SL A+F WGS+G  +KMHW  WE +C
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]2.5e-2345.52Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STF-QCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ++NL+KS  Y+S N     K  +  +L ++ VD    YLGLP        +TF +  +RV K LQGWKG   S  GK+ILIK+V Q IPTY +S F I
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STF-QCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL
        P  + S+  +LCA+F WG  G  RK+HWK W+ L
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL

TrEMBL top hitse value%identityAlignment
A0A2N9EK17 Reverse transcriptase domain-containing protein1.6e-2341.43Show/hide
Query:  NEKAKLGQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPSTF---------QCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYA
        N +   GQ LN +KS  ++SKN P   K  +S +L   +  + G YLGLP            +   R+ K LQGWKG   S  G+++LIK+V   IPTYA
Subjt:  NEKAKLGQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPSTF---------QCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYA

Query:  ISCFWIPKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL
        +SCF IP+ + S+  +L ++F WG  G  RK+HW KWE L
Subjt:  ISCFWIPKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL

A0A2P6Q699 Putative RNA-directed DNA polymerase2.0e-2345.19Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +N +KS V +SKNV  +T+ +L+  L + +V+S   YLGLP        STFQ    R+ + LQ W+G   S  GKDILI+ V Q +PTYA+SCF +
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLP--------STFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
         K         CA+F WGSS   RK+HWK W+ LC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

A0A803PM68 Uncharacterized protein2.0e-2342.96Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +N  KS + + + V    K+ L+ ++ +++VD+ G YLGLPS         F+    +V   L+GWKGSFFS+ GK+ILIK+++Q IPTY +SCF +
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        PK  ++   S+ A+F WGSS    K+HW KW  LC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

A0A803PV25 Uncharacterized protein1.3e-2543.28Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWIP
        GQ +N  KS + + ++V    +T+L+  + +++VD+ G YLGLPS         F+  N+V   L+GWKGSFFS+ GK++LIK+++Q IPTY +SCF +P
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWIP

Query:  KAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        K  ++   S+ A+F WGSS    K+HW KW  LC
Subjt:  KAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

A0A803PWX1 Uncharacterized protein2.6e-2645.19Show/hide
Query:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI
        GQ +N  KS + + + V L  +T+L++++ +++VD+ G YLGLPS         F+   N+V   L+GWKGSFFS+ GK++LIK+VIQ IPTY +SCF +
Subjt:  GQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPS--------TFQ-CGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWI

Query:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC
        PK  ++   S+ A+F WGSS    K+HW KW+ LC
Subjt:  PKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.5e-0637.78Show/hide
Query:  IPTYAISCFWIPKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL
        +PTY ++CF +PK +  +  S+ A F W +   ++ MHWK W+ L
Subjt:  IPTYAISCFWIPKAILSKFSSLCAKFLWGSSGVSRKMHWKKWEDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACATGAACACCTTCAATGAGAAGGCAAAATTGGGTCAGAATCTTAATTTACAGAAGTCGATGGTGTATTATTCCAAAAATGTACCATTGGATACGAAGACTTA
TCTTAGTCATGTTCTGAAAATAAGGATGGTGGACTCTTTAGGCTCTTATCTTGGACTCCCCTCGACTTTTCAATGTGGTAATAGAGTTTGTAAAATTCTTCAAGGATGGA
AGGGAAGTTTTTTCTCTAGCGGCGGCAAGGATATCCTGATAAAGAGTGTTATTCAGAAAATCCCTACCTATGCAATTAGTTGTTTTTGGATCCCTAAAGCTATTCTTTCA
AAATTTTCGTCCCTTTGCGCTAAATTCTTATGGGGGTCATCAGGAGTATCACGTAAGATGCATTGGAAGAAATGGGAGGATCTGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTACATGAACACCTTCAATGAGAAGGCAAAATTGGGTCAGAATCTTAATTTACAGAAGTCGATGGTGTATTATTCCAAAAATGTACCATTGGATACGAAGACTTA
TCTTAGTCATGTTCTGAAAATAAGGATGGTGGACTCTTTAGGCTCTTATCTTGGACTCCCCTCGACTTTTCAATGTGGTAATAGAGTTTGTAAAATTCTTCAAGGATGGA
AGGGAAGTTTTTTCTCTAGCGGCGGCAAGGATATCCTGATAAAGAGTGTTATTCAGAAAATCCCTACCTATGCAATTAGTTGTTTTTGGATCCCTAAAGCTATTCTTTCA
AAATTTTCGTCCCTTTGCGCTAAATTCTTATGGGGGTCATCAGGAGTATCACGTAAGATGCATTGGAAGAAATGGGAGGATCTGTGTTAA
Protein sequenceShow/hide protein sequence
MCYMNTFNEKAKLGQNLNLQKSMVYYSKNVPLDTKTYLSHVLKIRMVDSLGSYLGLPSTFQCGNRVCKILQGWKGSFFSSGGKDILIKSVIQKIPTYAISCFWIPKAILS
KFSSLCAKFLWGSSGVSRKMHWKKWEDLC