; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035623 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035623
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:25748197..25748775
RNA-Seq ExpressionLag0035623
SyntenyLag0035623
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5530541.1 hypothetical protein RHGRI_025480 [Rhododendron griersonianum]8.8e-0429.59Show/hide
Query:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNL
        NL+   +PV  +CP C   PE+ DH LF C +A ++  +L    + + E      ++  + +L   G  + +N D  +D+   R G+G+V+RD +G +
Subjt:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNL

KAG6640000.1 hypothetical protein CIPAW_10G141100 [Carya illinoinensis]1.0e-0430.84Show/hide
Query:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRA-----RKILAYLDEFIKAQVENGLTPPYQVEFQSLIARG---EEVIMNTDATYDEINRRIGMGMVV
        +NL    V  + LCP+C    ET+ HAL+ CP A      K L  ++E+ +AQ+   L P +         R     ++ MN D   D   ++ G+G+V+
Subjt:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRA-----RKILAYLDEFIKAQVENGLTPPYQVEFQSLIARG---EEVIMNTDATYDEINRRIGMGMVV

Query:  RDKQGNL
        R + G L
Subjt:  RDKQGNL

OMO50989.1 reverse transcriptase [Corchorus capsularis]1.1e-0628.23Show/hide
Query:  LWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIAR-GEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA
        LW   +    +CP+C +  ET++HAL L     K+   +D   K  ++      +   F+ +I   G  + +N D  +D+ +   G+G+++RD  G +  
Subjt:  LWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIAR-GEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA

Query:  TSSKSSQIGITPLCAEAVAVLEGL
          +K+ +   +  CAEA+AV EGL
Subjt:  TSSKSSQIGITPLCAEAVAVLEGL

XP_030486845.1 uncharacterized protein LOC115703751 [Cannabis sativa]1.4e-0431.45Show/hide
Query:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKI----------LAYLDEFIKAQVENGLTPPYQVEFQSLIA--------RGEEVIMNTDATYDEI
        A L   H+    +CP+C    E+  HALF C R RKI          +    E+  AQ ++   P      +S+ A           ++ +NTDA  D+ 
Subjt:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKI----------LAYLDEFIKAQVENGLTPPYQVEFQSLIA--------RGEEVIMNTDATYDEI

Query:  NRRIGMGMVVRDKQGNLKATSSKS
        N+R G G V+RD  G++ A  SKS
Subjt:  NRRIGMGMVVRDKQGNLKATSSKS

XP_035543621.1 uncharacterized protein LOC118347698 [Juglans regia]3.0e-0425.9Show/hide
Query:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVE-FQSLIARGEE------------------VIMNTDATYDEI
        NL+   +  E  C +C    ET  HA++ CP A  I A  D F K  ++    P  + +  Q+L+ + ++                  V +N DA+ D  
Subjt:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVE-FQSLIARGEE------------------VIMNTDATYDEI

Query:  NRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV
        +RR+G+G+++RD++G          +    P+ AE+ A+
Subjt:  NRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV

TrEMBL top hitse value%identityAlignment
A0A1R3FYU3 Reverse transcriptase5.4e-0728.23Show/hide
Query:  LWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIAR-GEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA
        LW   +    +CP+C +  ET++HAL L     K+   +D   K  ++      +   F+ +I   G  + +N D  +D+ +   G+G+++RD  G +  
Subjt:  LWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIAR-GEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA

Query:  TSSKSSQIGITPLCAEAVAVLEGL
          +K+ +   +  CAEA+AV EGL
Subjt:  TSSKSSQIGITPLCAEAVAVLEGL

A0A1R3H2S5 Reverse transcriptase9.5e-0427.64Show/hide
Query:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA
        NL    + ++DLC VC    E+  H  F C  +R++   L +  +A+ +     P + +       G  V +NTDA++++   + G+G+  RD +GN+  
Subjt:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKA

Query:  TSSKSSQIGITPLCAEAVAVLEG
         + +      +PL AE  A+L G
Subjt:  TSSKSSQIGITPLCAEAVAVLEG

A0A6P9E8H5 uncharacterized protein LOC1183476981.5e-0425.9Show/hide
Query:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVE-FQSLIARGEE------------------VIMNTDATYDEI
        NL+   +  E  C +C    ET  HA++ CP A  I A  D F K  ++    P  + +  Q+L+ + ++                  V +N DA+ D  
Subjt:  NLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVE-FQSLIARGEE------------------VIMNTDATYDEI

Query:  NRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV
        +RR+G+G+++RD++G          +    P+ AE+ A+
Subjt:  NRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV

A0A803PHA9 Uncharacterized protein5.6e-0429.32Show/hide
Query:  LWSHHVPVEDLCPVCHEGPETSDHALF-LCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEE---------VIMNTDATYDEINRRIGMGMVV
        L + HV V+  CP+C++ PE+  H LF      R     LD +  AQ     TP   V F    + G E           +N D    +   R G+G+++
Subjt:  LWSHHVPVEDLCPVCHEGPETSDHALF-LCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEE---------VIMNTDATYDEINRRIGMGMVV

Query:  RDKQGNLKATSSKSSQIGITPLCAEAVAVLEGL
        RD +  +    SKS    ++P  AE + V E L
Subjt:  RDKQGNLKATSSKSSQIGITPLCAEAVAVLEGL

A0A803QFU0 Uncharacterized protein1.1e-0428.85Show/hide
Query:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARK-----------------ILAYLDEFI--------------KAQVEN----GLTPPYQVEFQSLI
        A L   H+    LCP+C    ET +HALFLC RA++                 IL +  E++                 V N     +TP   +    + 
Subjt:  ANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARK-----------------ILAYLDEFI--------------KAQVEN----GLTPPYQVEFQSLI

Query:  ARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV
            ++ +NTDA  +  N+ IG+G V+RD  G +KA  SKS      P   EA A+
Subjt:  ARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKATSSKSSQIGITPLCAEAVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCTTTGGAGTCACCATGTCCCGGTTGAGGATCTTTGCCCTGTCTGCCACGAGGGTCCGGAGACTTCAGATCATGCATTGTTTCTTTGCCCTCGGGCTAGGAA
AATCCTTGCTTATCTAGATGAGTTTATTAAGGCACAAGTGGAAAATGGTCTCACTCCCCCGTATCAAGTCGAGTTTCAATCGTTGATTGCTAGAGGGGAGGAGGTCATTA
TGAATACTGATGCGACTTATGATGAGATTAACCGAAGGATTGGAATGGGGATGGTGGTACGAGATAAGCAGGGTAACCTTAAGGCGACATCTTCTAAATCATCGCAAATT
GGTATTACCCCGCTATGTGCTGAAGCGGTTGCAGTTCTAGAGGGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATCTTTGGAGTCACCATGTCCCGGTTGAGGATCTTTGCCCTGTCTGCCACGAGGGTCCGGAGACTTCAGATCATGCATTGTTTCTTTGCCCTCGGGCTAGGAA
AATCCTTGCTTATCTAGATGAGTTTATTAAGGCACAAGTGGAAAATGGTCTCACTCCCCCGTATCAAGTCGAGTTTCAATCGTTGATTGCTAGAGGGGAGGAGGTCATTA
TGAATACTGATGCGACTTATGATGAGATTAACCGAAGGATTGGAATGGGGATGGTGGTACGAGATAAGCAGGGTAACCTTAAGGCGACATCTTCTAAATCATCGCAAATT
GGTATTACCCCGCTATGTGCTGAAGCGGTTGCAGTTCTAGAGGGTCTTTAG
Protein sequenceShow/hide protein sequence
MANLWSHHVPVEDLCPVCHEGPETSDHALFLCPRARKILAYLDEFIKAQVENGLTPPYQVEFQSLIARGEEVIMNTDATYDEINRRIGMGMVVRDKQGNLKATSSKSSQI
GITPLCAEAVAVLEGL