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Lag0035624 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035624
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:25748788..25749096
RNA-Seq ExpressionLag0035624
SyntenyLag0035624
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3486627.1 reverse transcriptase [Gossypium australe]6.5e-0529.67Show/hide
Query:  MGMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGL-HSIPQVWYDNYPDWITRLALQER
        MG +   +   +L+ +  ++   +  SCI++++ +I+    +F RVSF HV R  N++ H + + G  + IPQ W +  P  +  L +QER
Subjt:  MGMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGL-HSIPQVWYDNYPDWITRLALQER
XP_021734865.1 uncharacterized protein LOC110701540 [Chenopodium quinoa]2.0e-0636.26Show/hide
Query:  GMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGLHSI-PQVWYDNYPDWITRLALQERP
        G +   V +    LV+AI+++ +G+SC+  +L DI  + +SF+ VS+S +RR  N++ H LA S +  +  QVW  N+P  IT L   + P
Subjt:  GMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGLHSI-PQVWYDNYPDWITRLALQERP
TrEMBL top hitse value%identityAlignment
A0A5B6X174 Reverse transcriptase3.1e-0529.67Show/hide
Query:  MGMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGL-HSIPQVWYDNYPDWITRLALQER
        MG +   +   +L+ +  ++   +  SCI++++ +I+    +F RVSF HV R  N++ H + + G  + IPQ W +  P  +  L +QER
Subjt:  MGMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGL-HSIPQVWYDNYPDWITRLALQER
A0A7C9DNW7 RNase H domain-containing protein3.5e-0434.41Show/hide
Query:  GMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGLH-SIPQVWYDNYPDWITRLALQERPLF
        G++   + T S ++V A+    Q ++  +  + D+  +   FD +SFSHVRR  NR+ H LA+S L     +VW  N P  IT +   E+P F
Subjt:  GMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGLH-SIPQVWYDNYPDWITRLALQERPLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATGAAATGTGCATCAGTTCTGACATATTCCCTTTCATTGGTTTCTGCCATTCAGGACGAGCGCCAAGGTGAATCTTGTATTGCCACAGTCCTGTGGGATATTAG
GAGAATGCAGGATTCATTTGATAGGGTATCATTTTCTCATGTCCGAAGACGGTTCAATAGGATTGTGCATGGGTTGGCCCAGTCGGGCCTTCATTCTATTCCACAAGTGT
GGTACGATAATTATCCAGATTGGATAACTAGATTGGCGCTTCAAGAGCGTCCTTTATTTGTATCCCATAGGGAATTTTCTTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATGAAATGTGCATCAGTTCTGACATATTCCCTTTCATTGGTTTCTGCCATTCAGGACGAGCGCCAAGGTGAATCTTGTATTGCCACAGTCCTGTGGGATATTAG
GAGAATGCAGGATTCATTTGATAGGGTATCATTTTCTCATGTCCGAAGACGGTTCAATAGGATTGTGCATGGGTTGGCCCAGTCGGGCCTTCATTCTATTCCACAAGTGT
GGTACGATAATTATCCAGATTGGATAACTAGATTGGCGCTTCAAGAGCGTCCTTTATTTGTATCCCATAGGGAATTTTCTTGTTCTTAA
Protein sequenceShow/hide protein sequence
MGMKCASVLTYSLSLVSAIQDERQGESCIATVLWDIRRMQDSFDRVSFSHVRRRFNRIVHGLAQSGLHSIPQVWYDNYPDWITRLALQERPLFVSHREFSCS