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Lag0035639 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035639
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:26024607..26029456
RNA-Seq ExpressionLag0035639
SyntenyLag0035639
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021736443.1 uncharacterized protein LOC110702992 [Chenopodium quinoa]1.2e-0732.84Show/hide
Query:  GLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS-------------LIENVLF----------QFVHREGN
        GLG +VRD +G V+LS  +      DVD+ E  AA  SL +  + G    ILETD+ ++ +              +++++L+            V R GN
Subjt:  GLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS-------------LIENVLF----------QFVHREGN

Query:  QAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLND
          AHRLA+ +I      VWM+  P C  D VL D
Subjt:  QAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLND

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.3e-1636.41Show/hide
Query:  LVEWAKGYVVAFREV------GRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM
        LVEWA  YV+ FRE       GR +      W                      AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L + +
Subjt:  LVEWAKGYVVAFREV------GRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM

Query:  GLAPAILETDSSRV-------SRSLIE----------------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP---------RCLEDVV
        G+ P ILETDSSR+       S  L E                +  F FV REGN+AAH LAR A+      +WM+  P          CLE++V
Subjt:  GLAPAILETDSSRV-------SRSLIE----------------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP---------RCLEDVV

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]9.8e-1334.68Show/hide
Query:  LVEWAKGYVVAFRE------VGRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM
        LVEWA  Y + FRE       GR +      W                      AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +++
Subjt:  LVEWAKGYVVAFRE------VGRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM

Query:  GLAPAILETDSSRVSRSLIE---------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP----RCLE
        G+ PA+   D S     +++         +  F FV REGN+AAH LAR A+      +WM+  P     CLE
Subjt:  GLAPAILETDSSRVSRSLIE---------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP----RCLE

XP_040987788.1 uncharacterized protein LOC121235507 [Juglans microcarpa x Juglans regia]5.6e-0830.66Show/hide
Query:  GLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS-------------LIENVL----------FQFVHREGN
        GLG+I+RD  G+V  +A  T++    +  AE  A  +++ L  ++GL   I E D+  V  +             L+EN+             F+HREGN
Subjt:  GLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS-------------LIENVL----------FQFVHREGN

Query:  QAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSMF
        + AH+LA+LA+   +D  W++ CP  + D +  D M+
Subjt:  QAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSMF

XP_042958143.1 uncharacterized protein LOC122293710 [Carya illinoinensis]5.6e-0828.65Show/hide
Query:  SGLVEWAK---GYVVAFREVGRSSGEVGREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS------
        SG   W K   G++ A      ++  +     GLGI++RD +G+V+  A F K  + D  +AE  A  +++EL  ++G    ILE D+  V  +      
Subjt:  SGLVEWAK---GYVVAFREVGRSSGEVGREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRS------

Query:  -------LIENV----------LFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSMFEG
               ++E+V            QF  REGN+ AH LA+ A+    D++W+  CP  +   V  +S   G
Subjt:  -------LIENV----------LFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSMFEG

TrEMBL top hitse value%identityAlignment
A0A2N9I7P8 Uncharacterized protein1.8e-0730.23Show/hide
Query:  HQRGAERPSGLVEWAKGYVVAFREVGRSSGEVGREW--AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSR
        H     +P+  V W     + ++      G V +E   AG+G+IVRD LG VM S T        V   E +A  +S++   ++G+A A  E DS  +  
Subjt:  HQRGAERPSGLVEWAKGYVVAFREVGRSSGEVGREW--AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSR

Query:  SL-----------------------IENVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLN
        +L                       +++  F  V REGN+ AH LAR A +  S EVWM++ P  LE + L+
Subjt:  SL-----------------------IENVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLN

A0A5J9T963 RNase H domain-containing protein (Fragment)1.8e-0732.61Show/hide
Query:  GREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRV----------------------SRSLIENVLFQFVH
        G   AGLGII+R+ LGQV+LSA     +V  V+  E  A ++ ++L ++      I+E+D   V                      S  ++ +V FQ V 
Subjt:  GREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRV----------------------SRSLIENVLFQFVH

Query:  REGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLND
        RE N  AH L++LA       VW +  PRC+E +V  D
Subjt:  REGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLND

A0A6J1CIF1 uncharacterized protein LOC1110112371.6e-1636.41Show/hide
Query:  LVEWAKGYVVAFREV------GRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM
        LVEWA  YV+ FRE       GR +      W                      AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L + +
Subjt:  LVEWAKGYVVAFREV------GRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM

Query:  GLAPAILETDSSRV-------SRSLIE----------------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP---------RCLEDVV
        G+ P ILETDSSR+       S  L E                +  F FV REGN+AAH LAR A+      +WM+  P          CLE++V
Subjt:  GLAPAILETDSSRV-------SRSLIE----------------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP---------RCLEDVV

A0A6J1DAR4 uncharacterized protein LOC1110189544.8e-1334.68Show/hide
Query:  LVEWAKGYVVAFRE------VGRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM
        LVEWA  Y + FRE       GR +      W                      AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +++
Subjt:  LVEWAKGYVVAFRE------VGRSSGEVGREW----------------------AGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADM

Query:  GLAPAILETDSSRVSRSLIE---------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP----RCLE
        G+ PA+   D S     +++         +  F FV REGN+AAH LAR A+      +WM+  P     CLE
Subjt:  GLAPAILETDSSRVSRSLIE---------NVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCP----RCLE

A2Q2Z8 Polynucleotidyl transferase, Ribonuclease H fold1.8e-0727.1Show/hide
Query:  RGAERPSGLVEWAKGYVVAFREVGRSSGEVGREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRV------
        R   RP+   +W +  +   +    ++ +   +W GLGII+RD +G VM ++T+  D       AE YA +  +    D G    + E D+ ++      
Subjt:  RGAERPSGLVEWAKGYVVAFREVGRSSGEVGREWAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVADMGLAPAILETDSSRV------

Query:  -SRSLIENVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSM
         ++S  +   FQF  R GN+ A+RLA+LA ++  ++VW++  P  +  +   D++
Subjt:  -SRSLIENVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCGTTTTCTGCGGGAAGCGGGGGGAATCTAGCATGCATTTTTTTGGGAATGCAAATGGGCCAAATCGATCCTACGAGAAGCGGGTTTTGGGGAGATCTTGGAGA
AAGTCCGAGCAGGATGTTGTCTACTACTCTGTCGGGACATCAGAGAGGGGCTGAGAGGCCGAGTGGGCTAGTGGAATGGGCGAAGGGGTATGTGGTGGCTTTTCGTGAGG
TTGGGAGGAGTAGTGGGGAAGTGGGGCGGGAATGGGCCGGCCTAGGGATAATTGTGCGGGATCCTTTGGGCCAAGTAATGCTGTCGGCGACCTTTACTAAGGATAATGTG
AGGGATGTTGACATGGCTGAAGGATATGCGGCCGTGAAAAGTTTGGAGTTGGTGGCAGATATGGGTTTGGCTCCAGCAATTCTTGAGACGGATTCGAGTAGAGTTTCCAG
ATCCTTAATCGAGAACGTACTGTTTCAGTTCGTTCACCGTGAAGGGAATCAGGCGGCGCACCGATTGGCGAGGTTAGCAATAGCCCAGTGGAGTGATGAGGTTTGGATGA
AGACTTGTCCTAGGTGCCTGGAGGACGTGGTTTTGAACGATTCAATGTTTGAAGGCCTAGACCGGCTTTATGGGGTTCATAAGTCTGTTGTCACTCCGATAGGGGTTAGT
CGGTCTCCCTTGCGAAACCTTAGTTGTCAGTGTAGGGGGAAGATAGGTGGAGGATCCCATAAATCTGTTGCTGGGCCATTAGAGACTCCTTTAGAATCTGCTATTGGTAT
TTCGTTCAGGGGTATGGGTTACATGTGGATTGATGAGATTAGGAGTGGTACCAGTGCGGCATTGGAAGAGTCTTCTGCTTCATCTCAAATTTTTGAACCTGGTAATAAGG
TTTCGATTGTGAAACTTACTGATGATAACTTTCTTTTATGGAAATTTCAGATTCAATTTGCTCTTAAGGATTACAACTTGGAATCCTATTTGCATGATGATCCGCTTGCT
CAATATTTACAACCCCCTCTGATTCTGTCACAAGAGAAGGTTCTTCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGCGTTTTCTGCGGGAAGCGGGGGGAATCTAGCATGCATTTTTTTGGGAATGCAAATGGGCCAAATCGATCCTACGAGAAGCGGGTTTTGGGGAGATCTTGGAGA
AAGTCCGAGCAGGATGTTGTCTACTACTCTGTCGGGACATCAGAGAGGGGCTGAGAGGCCGAGTGGGCTAGTGGAATGGGCGAAGGGGTATGTGGTGGCTTTTCGTGAGG
TTGGGAGGAGTAGTGGGGAAGTGGGGCGGGAATGGGCCGGCCTAGGGATAATTGTGCGGGATCCTTTGGGCCAAGTAATGCTGTCGGCGACCTTTACTAAGGATAATGTG
AGGGATGTTGACATGGCTGAAGGATATGCGGCCGTGAAAAGTTTGGAGTTGGTGGCAGATATGGGTTTGGCTCCAGCAATTCTTGAGACGGATTCGAGTAGAGTTTCCAG
ATCCTTAATCGAGAACGTACTGTTTCAGTTCGTTCACCGTGAAGGGAATCAGGCGGCGCACCGATTGGCGAGGTTAGCAATAGCCCAGTGGAGTGATGAGGTTTGGATGA
AGACTTGTCCTAGGTGCCTGGAGGACGTGGTTTTGAACGATTCAATGTTTGAAGGCCTAGACCGGCTTTATGGGGTTCATAAGTCTGTTGTCACTCCGATAGGGGTTAGT
CGGTCTCCCTTGCGAAACCTTAGTTGTCAGTGTAGGGGGAAGATAGGTGGAGGATCCCATAAATCTGTTGCTGGGCCATTAGAGACTCCTTTAGAATCTGCTATTGGTAT
TTCGTTCAGGGGTATGGGTTACATGTGGATTGATGAGATTAGGAGTGGTACCAGTGCGGCATTGGAAGAGTCTTCTGCTTCATCTCAAATTTTTGAACCTGGTAATAAGG
TTTCGATTGTGAAACTTACTGATGATAACTTTCTTTTATGGAAATTTCAGATTCAATTTGCTCTTAAGGATTACAACTTGGAATCCTATTTGCATGATGATCCGCTTGCT
CAATATTTACAACCCCCTCTGATTCTGTCACAAGAGAAGGTTCTTCGGTAG
Protein sequenceShow/hide protein sequence
MYAFSAGSGGNLACIFLGMQMGQIDPTRSGFWGDLGESPSRMLSTTLSGHQRGAERPSGLVEWAKGYVVAFREVGRSSGEVGREWAGLGIIVRDPLGQVMLSATFTKDNV
RDVDMAEGYAAVKSLELVADMGLAPAILETDSSRVSRSLIENVLFQFVHREGNQAAHRLARLAIAQWSDEVWMKTCPRCLEDVVLNDSMFEGLDRLYGVHKSVVTPIGVS
RSPLRNLSCQCRGKIGGGSHKSVAGPLETPLESAIGISFRGMGYMWIDEIRSGTSAALEESSASSQIFEPGNKVSIVKLTDDNFLLWKFQIQFALKDYNLESYLHDDPLA
QYLQPPLILSQEKVLR