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Lag0035673 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035673
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:26757483..26757803
RNA-Seq ExpressionLag0035673
SyntenyLag0035673
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-0740.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+S    ++N Y G ITR RSK I  E  Q   +A  +L++++ES K  I I EN ++    S S +  +   P VMSVMM D  T E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

KAA0065961.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0740.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        MTS + SSK   +++ Y   +T  RSK I  +  Q  VIA  +L++++E +K EI I EN ++  F SPS +      P VMSVMM +  T E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.2e-0640.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+SK  A+++ Y G ITR RSK I     Q   IA  +L++++ES K  I I EN ++  + S S +  +   P VMSVMM D    E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.2e-0640.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+SK  A+++ Y G ITR RSK I     Q   IA  +L++++ES K  I I EN ++  + S S +  +   P VMSVMM D    E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.2e-0640.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+SK  A+++ Y G ITR RSK I     Q   IA  +L++++ES K  I I EN ++  + S S +  +   P VMSVMM D    E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

TrEMBL top hitse value%identityAlignment
A0A5A7VCU1 Ty3-gypsy retrotransposon protein5.9e-0739.39Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+S+   +++ Y G ITR RSK I  E  Q   +   +L++++ES K  I I EN ++    S S +  +   P VMSVMMTD  T+E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.0e-0638.46Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGT
        M S++A+SK   +++ Y+G ITR RSK I  E  Q   +A  +L++++ES K  I + EN ++    S S +  +   P VMSVMM D  T
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGT

A0A5A7VJT9 Ty3-gypsy retrotransposon protein1.2e-0740.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        MTS + SSK   +++ Y   +T  RSK I  +  Q  VIA  +L++++E +K EI I EN ++  F SPS +      P VMSVMM +  T E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

A0A5D3BDK1 Ty3-gypsy retrotransposon protein7.8e-0740.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+S    +++ Y G ITR RSK I  E  Q   IA  +L++++ES K  I I EN ++    S S +  +   P VMSV+MTD  T+E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.5e-0740.4Show/hide
Query:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV
        M S++A+S    ++N Y G ITR RSK I  E  Q   +A  +L++++ES K  I I EN ++    S S +  +   P VMSVMM D  T E  MAE+
Subjt:  MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAACAACTTCTATGTGGGTTCAATTACGCGTGGTCGCTCCAAGGAGATCCACCACGAAGATAGTCAAACTCC
TGTCATCGCAAACAAGATGCTGAGACGCATGATAGAATCTGCTAAAGTTGAAATCGCCATTGCAGAAAATCTGATGTTTGGAAAATTCACCTCTCCTTCTCAGCAACCAA
ACGAAACACCAAGTCCTTATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAAAATGGATGGCTGAAGTTGGAGGAAGATCAGCATGTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAACAACTTCTATGTGGGTTCAATTACGCGTGGTCGCTCCAAGGAGATCCACCACGAAGATAGTCAAACTCC
TGTCATCGCAAACAAGATGCTGAGACGCATGATAGAATCTGCTAAAGTTGAAATCGCCATTGCAGAAAATCTGATGTTTGGAAAATTCACCTCTCCTTCTCAGCAACCAA
ACGAAACACCAAGTCCTTATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAAAATGGATGGCTGAAGTTGGAGGAAGATCAGCATGTTACTGA
Protein sequenceShow/hide protein sequence
MTSEEASSKIDASNNFYVGSITRGRSKEIHHEDSQTPVIANKMLRRMIESAKVEIAIAENLMFGKFTSPSQQPNETPSPYVMSVMMTDAGTSEKWMAEVGGRSACY