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Lag0035675 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035675
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:26829446..26831964
RNA-Seq ExpressionLag0035675
SyntenyLag0035675
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]1.4e-1624.73Show/hide
Query:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPW
        + E E++Q   ++ +  +E  +V ++ +  I   ++ +   ++ KV T KK+N E F+  +  IWNQ     +  VG N F+  F N   +  + + GPW
Subjt:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPW

Query:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP
         + K +++ E+PKG   I  ++F                                                        +PLKR + +K G  +E   + 
Subjt:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP

Query:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGR
        + YE+LPDFC+ CGR+GH+++EC DE   + +  G +  +G ++R     KS+ +  S        RGR + G R
Subjt:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGR

TXG54013.1 hypothetical protein EZV62_019269 [Acer yangbiense]1.7e-1727Show/hide
Query:  DKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQKH-TNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDMEFR-------
        ++ EQ L+ S++ K  TNK IN E F++ +S IW  K+   +  +G N F  +F+N   +  IL+ GPW +DK +L+  E  G   + D++FR       
Subjt:  DKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQKH-TNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDMEFR-------

Query:  --------------------------------------------------PLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC---DEQI
                                                          PLKRG+ +  G  ++   + I YE+LP+FCY CG++GH +++C    ++I
Subjt:  --------------------------------------------------PLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC---DEQI

Query:  SSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRG
        +SS +   +GP++R   R +S+  G    +  G   G
Subjt:  SSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRG

TXG69340.1 hypothetical protein EZV62_004275 [Acer yangbiense]3.1e-1628Show/hide
Query:  ELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDK
        E+++   ++ +  E++  +   E+  +D   + +   ++ KV + KK+N E F+  +  IWN   H  +  VG N F+  F N   +  +L  G W +  
Subjt:  ELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDK

Query:  VMLLFEEPKGGIYIEDMEFR-----------PL----KRGI-FLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQ---ISSSGAELLYGPFL
         +++ E+P G   I  + F            PL    +R + +LK G  D+   + + YE+LPDFCY CGR+GH +KEC DE+   ++  G+   +G +L
Subjt:  VMLLFEEPKGGIYIEDMEFR-----------PL----KRGI-FLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQ---ISSSGAELLYGPFL

Query:  REPVRIKSEERGSSSGNTHGRGRGR
        +  +  K + R +  GN     R R
Subjt:  REPVRIKSEERGSSSGNTHGRGRGR

TXG73181.1 hypothetical protein EZV62_001760 [Acer yangbiense]1.2e-1525.56Show/hide
Query:  PRFLSGLAVEVGNRSAGCEAALLLFWCNFVCWWKKILMEDELSQQLADMWVTL---EEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKM
        P FLS   + +G  S    A         V   K + +E   + +LA +   L   +E   + Q+ +      E+ + + ++ KV + K++N + F++ +
Subjt:  PRFLSGLAVEVGNRSAGCEAALLLFWCNFVCWWKKILMEDELSQQLADMWVTL---EEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKM

Query:  SIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDME-------------------------FRPLKRGIFLKSGS
          +WN   +  I  VG N FL  F N+  +  +   GPW +DK +L+ E+P      E +E                          +PLKR + L    
Subjt:  SIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDME-------------------------FRPLKRGIFLKSGS

Query:  KDEDKWIPITYEKLPDFCYGCGRLGHTIKECD----EQISSSGAELLYGPFLREPVRIKSEERGSS
              + + YE+LP+FCY CGR+GH I EC     ++++  G    +G ++R  +  KS ++ SS
Subjt:  KDEDKWIPITYEKLPDFCYGCGRLGHTIKECD----EQISSSGAELLYGPFLREPVRIKSEERGSS

TXG73661.1 hypothetical protein EZV62_002240 [Acer yangbiense]1.1e-1631.58Show/hide
Query:  EEKVSVFQL-EDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKG--
        +E V+V ++ E+ +ID  E  +   ++ KV   KK+N + F+  +  IWN   H  I  VG N F+  F N+  +  +   GPW +   +++ E+P G  
Subjt:  EEKVSVFQL-EDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKG--

Query:  ---GIYIEDMEFRPLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQISSS---GAELLYGPFLREPVRIKSEERGS
            + +     +PLKR + LK G  +E   + + YE+LP+FC+ CGR+GH IK C DE+   +   G+   +G +L+  +  +S+ RG+
Subjt:  ---GIYIEDMEFRPLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQISSS---GAELLYGPFLREPVRIKSEERGS

TrEMBL top hitse value%identityAlignment
A0A5C7GU64 CCHC-type domain-containing protein6.8e-1724.73Show/hide
Query:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPW
        + E E++Q   ++ +  +E  +V ++ +  I   ++ +   ++ KV T KK+N E F+  +  IWNQ     +  VG N F+  F N   +  + + GPW
Subjt:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPW

Query:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP
         + K +++ E+PKG   I  ++F                                                        +PLKR + +K G  +E   + 
Subjt:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP

Query:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGR
        + YE+LPDFC+ CGR+GH+++EC DE   + +  G +  +G ++R     KS+ +  S        RGR + G R
Subjt:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGR

A0A5C7H9Y2 CCHC-type domain-containing protein8.0e-1827Show/hide
Query:  DKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQKH-TNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDMEFR-------
        ++ EQ L+ S++ K  TNK IN E F++ +S IW  K+   +  +G N F  +F+N   +  IL+ GPW +DK +L+  E  G   + D++FR       
Subjt:  DKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQKH-TNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDMEFR-------

Query:  --------------------------------------------------PLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC---DEQI
                                                          PLKRG+ +  G  ++   + I YE+LP+FCY CG++GH +++C    ++I
Subjt:  --------------------------------------------------PLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC---DEQI

Query:  SSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRG
        +SS +   +GP++R   R +S+  G    +  G   G
Subjt:  SSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRG

A0A5C7HJ97 CCHC-type domain-containing protein9.8e-1625.35Show/hide
Query:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQK-HTNIVNVGFNAFLCKFKNARIKGWILDLGPW
        + E E+++    +++  E++  +   E+  +D  E  +   ++ KV + KK+N E F+  +  IWN      +  VG N F+  F N   +  + + GPW
Subjt:  LMEDELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQK-HTNIVNVGFNAFLCKFKNARIKGWILDLGPW

Query:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP
         +   +++ E+P G   I  + F                                                        +PLKR + LK G  DE   + 
Subjt:  FYDKVMLLFEEPKGGIYIEDMEF--------------------------------------------------------RPLKRGIFLKSGSKDEDKWIP

Query:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGRGRWQNNSVDNEGE
        + YE+LP+FCY CG++GH IKEC DE   Q +  G+   +G +L+ PV  + + R  S GN        G    R +   NS D EG+
Subjt:  ITYEKLPDFCYGCGRLGHTIKEC-DE---QISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGRGRWQNNSVDNEGE

A0A5C7IJ96 CCHC-type domain-containing protein1.5e-1628Show/hide
Query:  ELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDK
        E+++   ++ +  E++  +   E+  +D   + +   ++ KV + KK+N E F+  +  IWN   H  +  VG N F+  F N   +  +L  G W +  
Subjt:  ELSQQLADMWVTLEEKVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDK

Query:  VMLLFEEPKGGIYIEDMEFR-----------PL----KRGI-FLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQ---ISSSGAELLYGPFL
         +++ E+P G   I  + F            PL    +R + +LK G  D+   + + YE+LPDFCY CGR+GH +KEC DE+   ++  G+   +G +L
Subjt:  VMLLFEEPKGGIYIEDMEFR-----------PL----KRGI-FLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQ---ISSSGAELLYGPFL

Query:  REPVRIKSEERGSSSGNTHGRGRGR
        +  +  K + R +  GN     R R
Subjt:  REPVRIKSEERGSSSGNTHGRGRGR

A0A5C7IWJ4 CCHC-type domain-containing protein5.2e-1731.58Show/hide
Query:  EEKVSVFQL-EDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKG--
        +E V+V ++ E+ +ID  E  +   ++ KV   KK+N + F+  +  IWN   H  I  VG N F+  F N+  +  +   GPW +   +++ E+P G  
Subjt:  EEKVSVFQL-EDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQ-KHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKG--

Query:  ---GIYIEDMEFRPLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQISSS---GAELLYGPFLREPVRIKSEERGS
            + +     +PLKR + LK G  +E   + + YE+LP+FC+ CGR+GH IK C DE+   +   G+   +G +L+  +  +S+ RG+
Subjt:  ---GIYIEDMEFRPLKRGIFLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKEC-DEQISSS---GAELLYGPFLREPVRIKSEERGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCCAAATGGTGCTTTCATCATGTCTCCAGCTCCATTTCCCCTTGGGTTTCTCTCCTCCGGCCCCTTTTCGATTTCTTCCTCTCCAAGACCTACCCCTCTTCG
ATGTCTTCATTTCATCTGGACCTTGAGGGTTTACTTTGACAACTTCCCATTGGTTCCTCGCTTTCTCTCTGGGTTAGCGGTGGAAGTTGGCAACCGGAGTGCTGGTTGTG
AGGCAGCGTTACTGCTGTTTTGGTGCAACTTTGTCTGCTGGTGGAAGAAAATCCTAATGGAAGACGAATTATCCCAACAGCTTGCGGATATGTGGGTTACTCTTGAGGAG
AAAGTCAGCGTTTTTCAGCTTGAAGACAGAGAAATAGATAAATCCGAGCAGCATCTGGCGAACTCAATTCTCTATAAGGTTTACACAAACAAGAAGATTAATATAGAGAT
GTTTCAAGCAAAAATGTCGATAATCTGGAATCAGAAACATACCAACATTGTTAACGTGGGTTTCAATGCATTTTTATGCAAATTCAAGAATGCCAGAATTAAGGGATGGA
TACTAGACTTGGGACCGTGGTTCTACGACAAAGTTATGTTATTGTTCGAGGAACCGAAGGGGGGAATCTACATCGAGGACATGGAGTTCAGGCCATTGAAGCGGGGAATT
TTCTTGAAATCAGGGAGTAAAGATGAGGATAAATGGATTCCTATTACGTACGAAAAACTACCGGACTTTTGCTATGGATGTGGTCGATTGGGGCATACCATCAAAGAGTG
CGACGAACAGATTAGCTCAAGCGGTGCGGAGCTTTTGTACGGGCCTTTCCTCCGTGAGCCGGTGAGGATTAAAAGTGAGGAAAGAGGGTCGTCATCGGGAAACACTCACG
GTAGAGGCAGGGGTCGGGGCTTGTATGGTGGTCGTGGAAGATGGCAAAATAACAGTGTTGACAATGAAGGAGAGGAAGAGAATGGCGATCACAGTCTACCGGTAGAGGAA
TCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCCAAATGGTGCTTTCATCATGTCTCCAGCTCCATTTCCCCTTGGGTTTCTCTCCTCCGGCCCCTTTTCGATTTCTTCCTCTCCAAGACCTACCCCTCTTCG
ATGTCTTCATTTCATCTGGACCTTGAGGGTTTACTTTGACAACTTCCCATTGGTTCCTCGCTTTCTCTCTGGGTTAGCGGTGGAAGTTGGCAACCGGAGTGCTGGTTGTG
AGGCAGCGTTACTGCTGTTTTGGTGCAACTTTGTCTGCTGGTGGAAGAAAATCCTAATGGAAGACGAATTATCCCAACAGCTTGCGGATATGTGGGTTACTCTTGAGGAG
AAAGTCAGCGTTTTTCAGCTTGAAGACAGAGAAATAGATAAATCCGAGCAGCATCTGGCGAACTCAATTCTCTATAAGGTTTACACAAACAAGAAGATTAATATAGAGAT
GTTTCAAGCAAAAATGTCGATAATCTGGAATCAGAAACATACCAACATTGTTAACGTGGGTTTCAATGCATTTTTATGCAAATTCAAGAATGCCAGAATTAAGGGATGGA
TACTAGACTTGGGACCGTGGTTCTACGACAAAGTTATGTTATTGTTCGAGGAACCGAAGGGGGGAATCTACATCGAGGACATGGAGTTCAGGCCATTGAAGCGGGGAATT
TTCTTGAAATCAGGGAGTAAAGATGAGGATAAATGGATTCCTATTACGTACGAAAAACTACCGGACTTTTGCTATGGATGTGGTCGATTGGGGCATACCATCAAAGAGTG
CGACGAACAGATTAGCTCAAGCGGTGCGGAGCTTTTGTACGGGCCTTTCCTCCGTGAGCCGGTGAGGATTAAAAGTGAGGAAAGAGGGTCGTCATCGGGAAACACTCACG
GTAGAGGCAGGGGTCGGGGCTTGTATGGTGGTCGTGGAAGATGGCAAAATAACAGTGTTGACAATGAAGGAGAGGAAGAGAATGGCGATCACAGTCTACCGGTAGAGGAA
TCATAA
Protein sequenceShow/hide protein sequence
MEAPNGAFIMSPAPFPLGFLSSGPFSISSSPRPTPLRCLHFIWTLRVYFDNFPLVPRFLSGLAVEVGNRSAGCEAALLLFWCNFVCWWKKILMEDELSQQLADMWVTLEE
KVSVFQLEDREIDKSEQHLANSILYKVYTNKKINIEMFQAKMSIIWNQKHTNIVNVGFNAFLCKFKNARIKGWILDLGPWFYDKVMLLFEEPKGGIYIEDMEFRPLKRGI
FLKSGSKDEDKWIPITYEKLPDFCYGCGRLGHTIKECDEQISSSGAELLYGPFLREPVRIKSEERGSSSGNTHGRGRGRGLYGGRGRWQNNSVDNEGEEENGDHSLPVEE
S